# HG changeset patch
# User iuc
# Date 1710257837 0
# Node ID 0ac12c344bfa2aa1e1615fdff63a5636791a50ca
# Parent  db4fe71721140208d45c43ca0fd2fb5aae0e6a4c
planemo upload for repository https://github.com/katholt/sonneityping commit 4d048786a4cf9ecb045fa3263084f98105c15557

diff -r db4fe7172114 -r 0ac12c344bfa parse_mykrobe_predict.xml
--- a/parse_mykrobe_predict.xml	Thu Sep 16 06:52:18 2021 +0000
+++ b/parse_mykrobe_predict.xml	Tue Mar 12 15:37:17 2024 +0000
@@ -3,6 +3,9 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <xrefs>
+        <xref type="bio.tools">sonneityping</xref>
+    </xrefs>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
         parse_mykrobe_predict --jsons
@@ -31,7 +34,7 @@
     <tests>
         <test>
             <param name="json" ftype="json" value="SRR6114360.json"/>
-            <param name="optional.alleles" ftype="txt" value="alleles.txt" />
+            <param name="alleles" ftype="txt" value="alleles.txt" />
             <output name="parsed_output">
                 <assert_contents>
                     <has_text text="3.7.30.4" />