Mercurial > repos > iuc > spades_biosyntheticspades
comparison biosyntheticspades.xml @ 6:d89ced9439f3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
| author | iuc |
|---|---|
| date | Wed, 10 Aug 2022 13:17:51 +0000 |
| parents | 42a39792aaae |
| children | 604782a8a53a |
comparison
equal
deleted
inserted
replaced
| 5:1fc82fe7ebef | 6:d89ced9439f3 |
|---|---|
| 14 #if $additional_reads.selector == 'true' | 14 #if $additional_reads.selector == 'true' |
| 15 @PREPROCESS_INPUT_FILES_ADDITIONAL@ | 15 @PREPROCESS_INPUT_FILES_ADDITIONAL@ |
| 16 #end if | 16 #end if |
| 17 @PREPROCESS_NANOPORE_PACBIO_FILES@ | 17 @PREPROCESS_NANOPORE_PACBIO_FILES@ |
| 18 | 18 |
| 19 @OMP_THREADS@ | |
| 19 ## run | 20 ## run |
| 20 spades.py --bio | 21 spades.py --bio |
| 21 -o 'output' | 22 -o 'output' |
| 22 @RESOURCES@ | 23 @RESOURCES@ |
| 23 @INPUT_READS_MAIN@ | 24 @INPUT_READS_MAIN@ |
| 173 | 174 |
| 174 .. class:: infomark | 175 .. class:: infomark |
| 175 | 176 |
| 176 **References** | 177 **References** |
| 177 | 178 |
| 178 More information can be found on `github <https://github.com/ablab/spades>`_ and on the `project website <http://cab.spbu.ru/software/biosyntheticspades>`_. | 179 More information can be found on `github <https://github.com/ablab/spades>`_. |
| 179 ]]></help> | 180 ]]></help> |
| 180 <expand macro="citations"> | 181 <expand macro="citations"> |
| 181 <citation type="doi">10.1101/gr.243477.118</citation> | 182 <citation type="doi">10.1101/gr.243477.118</citation> |
| 182 </expand> | 183 </expand> |
| 183 </tool> | 184 </tool> |