Mercurial > repos > iuc > spades_coronaspades

comparison coronaspades.xml @ 7:ff41a00a6745 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
author iuc
date Wed, 10 Aug 2022 13:17:22 +0000
parents ad8b536d1caa
children 9678993ca5bd
comparison
equal deleted inserted replaced
6:fee85957cebe 7:ff41a00a6745
17 @PREPROCESS_NANOPORE_PACBIO_FILES@ 17 @PREPROCESS_NANOPORE_PACBIO_FILES@
18 @PREPROCESS_CONTIGS_FILES@ 18 @PREPROCESS_CONTIGS_FILES@
19 @PREPROCESS_SANGER_FILES@ 19 @PREPROCESS_SANGER_FILES@
20 20
21 21
22 @OMP_THREADS@
22 ## run 23 ## run
23 coronaspades.py 24 coronaspades.py
24 -o 'output' 25 -o 'output'
25 @RESOURCES@ 26 @RESOURCES@
26 @INPUT_READS_MAIN@ 27 @INPUT_READS_MAIN@
160 161
161 .. class:: infomark 162 .. class:: infomark
162 163
163 **References** 164 **References**
164 165
165 More information can be found on `github <https://github.com/ablab/spades>`_ and on the `project website <https://cab.spbu.ru/software/coronaspades/>`_. 166 More information can be found on `github <https://github.com/ablab/spades>`_.
166 ]]></help> 167 ]]></help>
167 <expand macro="citations"> 168 <expand macro="citations">
168 <citation type="doi">10.1093/bioinformatics/btab597</citation> 169 <citation type="doi">10.1093/bioinformatics/btab597</citation>
169 </expand> 170 </expand>
170 </tool> 171 </tool>