Mercurial > repos > iuc > spades_coronaspades
comparison coronaspades.xml @ 7:ff41a00a6745 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
author | iuc |
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date | Wed, 10 Aug 2022 13:17:22 +0000 |
parents | ad8b536d1caa |
children | 9678993ca5bd |
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6:fee85957cebe | 7:ff41a00a6745 |
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17 @PREPROCESS_NANOPORE_PACBIO_FILES@ | 17 @PREPROCESS_NANOPORE_PACBIO_FILES@ |
18 @PREPROCESS_CONTIGS_FILES@ | 18 @PREPROCESS_CONTIGS_FILES@ |
19 @PREPROCESS_SANGER_FILES@ | 19 @PREPROCESS_SANGER_FILES@ |
20 | 20 |
21 | 21 |
22 @OMP_THREADS@ | |
22 ## run | 23 ## run |
23 coronaspades.py | 24 coronaspades.py |
24 -o 'output' | 25 -o 'output' |
25 @RESOURCES@ | 26 @RESOURCES@ |
26 @INPUT_READS_MAIN@ | 27 @INPUT_READS_MAIN@ |
160 | 161 |
161 .. class:: infomark | 162 .. class:: infomark |
162 | 163 |
163 **References** | 164 **References** |
164 | 165 |
165 More information can be found on `github <https://github.com/ablab/spades>`_ and on the `project website <https://cab.spbu.ru/software/coronaspades/>`_. | 166 More information can be found on `github <https://github.com/ablab/spades>`_. |
166 ]]></help> | 167 ]]></help> |
167 <expand macro="citations"> | 168 <expand macro="citations"> |
168 <citation type="doi">10.1093/bioinformatics/btab597</citation> | 169 <citation type="doi">10.1093/bioinformatics/btab597</citation> |
169 </expand> | 170 </expand> |
170 </tool> | 171 </tool> |