view write_tsv_script.py @ 10:655fa188c3cc draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit f53f7f297e551bf58e753752edd0dae5205bbc77

#!/usr/bin/env python

import re
import sys

search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?"

replace_str = r"\1_\2\t\3\t\4"

cmd = re.compile(search_str)

sys.stdout.write("#name\tlength\tcoverage\n")

for i, line in enumerate(sys.stdin):
    if cmd.match(line):
        sys.stdout.write(cmd.sub(replace_str, line))