Mercurial > repos > iuc > spades_metaplasmidspades

comparison metaplasmidspades.xml @ 6:4a01e0d2892c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
author iuc
date Wed, 10 Aug 2022 13:16:53 +0000
parents 21da31ed41a1
children e5a3b75a271f
comparison
equal deleted inserted replaced
5:21da31ed41a1 6:4a01e0d2892c
17 @PREPROCESS_NANOPORE_PACBIO_FILES@ 17 @PREPROCESS_NANOPORE_PACBIO_FILES@
18 @PREPROCESS_SANGER_FILES@ 18 @PREPROCESS_SANGER_FILES@
19 @PREPROCESS_CONTIGS_FILES@ 19 @PREPROCESS_CONTIGS_FILES@
20 @PREPROCESS_ASSEMBLY_GRAPH_FILES@ 20 @PREPROCESS_ASSEMBLY_GRAPH_FILES@
21 21
22 @OMP_THREADS@
22 ## run 23 ## run
23 spades.py --meta --plasmid 24 spades.py --meta --plasmid
24 -o 'output' 25 -o 'output'
25 @RESOURCES@ 26 @RESOURCES@
26 @INPUT_READS_MAIN@ 27 @INPUT_READS_MAIN@
231 @HELP_OUT_S@ 232 @HELP_OUT_S@
232 @HELP_OUT_SS@ 233 @HELP_OUT_SS@
233 234
234 **References** 235 **References**
235 236
236 More information can be found on `github <https://github.com/ablab/spades>`_ and on the `project website <http://cab.spbu.ru/software/spades>`_. 237 More information can be found on `github <https://github.com/ablab/spades>`_.
237 ]]></help> 238 ]]></help>
238 <expand macro="citations"> 239 <expand macro="citations">
239 <citation type="doi">10.1101/gr.241299.118</citation> 240 <citation type="doi">10.1101/gr.241299.118</citation>
240 </expand> 241 </expand>
241 </tool> 242 </tool>