Mercurial > repos > iuc > spades_plasmidspades

comparison plasmidspades.xml @ 6:75405f5e2cc5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
author iuc
date Wed, 10 Aug 2022 13:15:28 +0000
parents 6aad515a5270
children 1708851f8804
comparison
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5:6aad515a5270 6:75405f5e2cc5
17 @PREPROCESS_NANOPORE_PACBIO_FILES@ 17 @PREPROCESS_NANOPORE_PACBIO_FILES@
18 @PREPROCESS_SANGER_FILES@ 18 @PREPROCESS_SANGER_FILES@
19 @PREPROCESS_CONTIGS_FILES@ 19 @PREPROCESS_CONTIGS_FILES@
20 @PREPROCESS_ASSEMBLY_GRAPH_FILES@ 20 @PREPROCESS_ASSEMBLY_GRAPH_FILES@
21 21
22 @OMP_THREADS@
22 ## run 23 ## run
23 plasmidspades.py 24 plasmidspades.py
24 $operation_mode 25 $operation_mode
25 -o 'output' 26 -o 'output'
26 @RESOURCES@ 27 @RESOURCES@
375 @HELP_OUT_SP@ 376 @HELP_OUT_SP@
376 @HELP_OUT_SS@ 377 @HELP_OUT_SS@
377 378
378 **References** 379 **References**
379 380
380 More information can be found on `github <https://github.com/ablab/spades>`_ and on the `project website <http://cab.spbu.ru/software/plasmid-spades>`_. 381 More information can be found on `github <https://github.com/ablab/spades>`_.
381 ]]></help> 382 ]]></help>
382 <expand macro="citations"> 383 <expand macro="citations">
383 <citation type="doi">10.1093/bioinformatics/btw493</citation> 384 <citation type="doi">10.1093/bioinformatics/btw493</citation>
384 </expand> 385 </expand>
385 </tool> 386 </tool>