Mercurial > repos > iuc > spades_plasmidspades
comparison plasmidspades.xml @ 6:75405f5e2cc5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
author | iuc |
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date | Wed, 10 Aug 2022 13:15:28 +0000 |
parents | 6aad515a5270 |
children | 1708851f8804 |
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5:6aad515a5270 | 6:75405f5e2cc5 |
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17 @PREPROCESS_NANOPORE_PACBIO_FILES@ | 17 @PREPROCESS_NANOPORE_PACBIO_FILES@ |
18 @PREPROCESS_SANGER_FILES@ | 18 @PREPROCESS_SANGER_FILES@ |
19 @PREPROCESS_CONTIGS_FILES@ | 19 @PREPROCESS_CONTIGS_FILES@ |
20 @PREPROCESS_ASSEMBLY_GRAPH_FILES@ | 20 @PREPROCESS_ASSEMBLY_GRAPH_FILES@ |
21 | 21 |
22 @OMP_THREADS@ | |
22 ## run | 23 ## run |
23 plasmidspades.py | 24 plasmidspades.py |
24 $operation_mode | 25 $operation_mode |
25 -o 'output' | 26 -o 'output' |
26 @RESOURCES@ | 27 @RESOURCES@ |
375 @HELP_OUT_SP@ | 376 @HELP_OUT_SP@ |
376 @HELP_OUT_SS@ | 377 @HELP_OUT_SS@ |
377 | 378 |
378 **References** | 379 **References** |
379 | 380 |
380 More information can be found on `github <https://github.com/ablab/spades>`_ and on the `project website <http://cab.spbu.ru/software/plasmid-spades>`_. | 381 More information can be found on `github <https://github.com/ablab/spades>`_. |
381 ]]></help> | 382 ]]></help> |
382 <expand macro="citations"> | 383 <expand macro="citations"> |
383 <citation type="doi">10.1093/bioinformatics/btw493</citation> | 384 <citation type="doi">10.1093/bioinformatics/btw493</citation> |
384 </expand> | 385 </expand> |
385 </tool> | 386 </tool> |