Mercurial > repos > iuc > spades_plasmidspades
comparison plasmidspades.xml @ 8:7bb235ff0746 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 066e075c1599b29e92708194db2b2ccc30b7677c
| author | iuc |
|---|---|
| date | Mon, 12 Feb 2024 21:45:59 +0000 |
| parents | 1708851f8804 |
| children |
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| 7:1708851f8804 | 8:7bb235ff0746 |
|---|---|
| 1 <tool id="spades_plasmidspades" name="plasmidSPAdes" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> | 1 <tool id="spades_plasmidspades" name="plasmidSPAdes" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> |
| 2 <description>extract and assembly plasmids from WGS data</description> | 2 <description>extract and assembly plasmids from WGS data</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <xrefs> | |
| 7 <xref type="bio.tools">plasmidspades</xref> | |
| 8 </xrefs> | |
| 6 <expand macro="requirements"/> | 9 <expand macro="requirements"/> |
| 7 <expand macro="stdio"/> | 10 <expand macro="stdio"/> |
| 8 <expand macro="version_command"/> | 11 <expand macro="version_command"/> |
| 9 <command detect_errors="exit_code"><![CDATA[ | 12 <command detect_errors="exit_code"><![CDATA[ |
| 10 | 13 |
| 95 <param name="input2" value="pl2.fq.gz"/> | 98 <param name="input2" value="pl2.fq.gz"/> |
| 96 </conditional> | 99 </conditional> |
| 97 <output name="out_ag"> | 100 <output name="out_ag"> |
| 98 <assert_contents> | 101 <assert_contents> |
| 99 <has_n_lines n="326"/> | 102 <has_n_lines n="326"/> |
| 100 <has_text_matching expression=">EDGE_22_length_9689_cov_4.668331:EDGE_22_length_9689_cov_4.668331"/> | 103 <has_text_matching expression=">EDGE\_18\_length\_9689\_cov\_4\.668331"/> |
| 101 </assert_contents> | 104 </assert_contents> |
| 102 </output> | 105 </output> |
| 103 <output name="out_ags"> | 106 <output name="out_ags"> |
| 104 <assert_contents> | 107 <assert_contents> |
| 105 <has_n_lines n="3"/> | 108 <has_n_lines n="3"/> |