Mercurial > repos > iuc > spades_plasmidspades
comparison write_tsv_script.py @ 2:e41dcb0e913b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 2609367ebbce7e0c3f5b4b2d7c60a82d4bd03246"
author | iuc |
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date | Tue, 25 Jan 2022 07:56:22 +0000 |
parents | |
children | 6aad515a5270 |
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1:3bac0de39a04 | 2:e41dcb0e913b |
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1 #!/usr/bin/env python | |
2 | |
3 import re | |
4 import sys | |
5 | |
6 search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*).*\$" | |
7 | |
8 replace_str = r"\1_\2\t\3\t\4" | |
9 | |
10 cmd = re.compile(search_str) | |
11 | |
12 sys.stdout.write("#name\tlength\tcoverage\n") | |
13 | |
14 for i, line in enumerate(sys.stdin): | |
15 if cmd.match(line): | |
16 sys.stdout.write(cmd.sub(replace_str, line)) |