Mercurial > repos > iuc > spaln
diff spaln.xml @ 2:dd0cd2319ae5 draft
"planemo upload for repository https://github.com/ogotoh/spaln commit c06dea51e720899c3245d203c3a0abc9f179583f"
author | iuc |
---|---|
date | Fri, 19 Nov 2021 10:09:15 +0000 |
parents | 37b5e1f0b544 |
children | 32c11a4b5dbf |
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--- a/spaln.xml Thu Jul 16 07:57:10 2020 -0400 +++ b/spaln.xml Fri Nov 19 10:09:15 2021 +0000 @@ -38,6 +38,8 @@ #if str($adv.max_gene_length).strip() != '' -XG'${adv.max_gene_length}' #end if + $adv.format_remote_queries + $adv.salvage_mode #end if '$genome' '$query' >'$output1' ]]></command> @@ -90,6 +92,8 @@ <param argument="-yL" name="min_intron_len" type="integer" value="30" label="Minimum expected length of intron" /> <param argument="-yZ" name="intron_potential_weight" type="integer" value="0" label="Weight for intron potential" /> <param argument="-XG" name="max_gene_length" type="text" label="Reset maximum expected gene size, suffix k or M is effective" /> + <param argument="-yX" name="format_remote_queries" type="boolean" checked="false" truevalue="-yX" falsevalue="" label="Format for remote queries" help="More sensitive but less economic than the default" /> + <param argument="-XS" name="salvage_mode" type="boolean" checked="false" truevalue="-XS" falsevalue="" label="Activate salvage mode" help="Examine all positively scored blocks. Considerably slow." /> </when> </conditional> </inputs>