comparison spyboat.xml @ 5:07a85bc414ba draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 8436aab757c3f41423f3ba76961c2f599f97fc40

4:8815bc7e9cef

<tool id="spyboat" name="SpyBOAT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT">
<description>wavelet analyzes image stacks</description>
    <macros>
        <token name="@TOOL_VERSION@">0.1.1</token>
        <token name="@VERSION_SUFFIX@">1</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">spyboat</requirement>
    </requirements>

    To limit the number of Wavelet transformations (computing time), downscaling of the input movie resolution is recommended. 
    Trimming away parts of the movie with no relevant data (e.g. outer dark edges) also speeds up the processing.

    If multiple channels are present in your data, extract the channel of interest beforehand (e.g. with Fiji).

    **Author**: Gregor Mönke ([e-mail]).

    **Wrapper by**: Jelle Scholtalbers ([e-mail]).

    **Know what you are doing**

    - Smallest Period:
        The minimal period to scan for, this is the higher (in frequency) end of the spectrum. A warning will be given during processing if the chosen value deceeds the Nyquist limit (2 times the sampling interval).

    - Largest period:
        The maximal period to scan for, this is the lower (in frequency) end of the spectrum. The inbuild Sinc filter will remove any periods larger than this form the data. Due to the 'roll off' of the filter, this value should be chosen generously. A warning will be given during processing if the chosen value exceeds the length of the time series.

    - Number of periods to scan for:
        This is the the number of convolutions computed per pixel.

        Spectral resolution =  ( biggest period - smallest period ) / number of periods

5:07a85bc414ba

<tool id="spyboat" name="SpyBOAT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT">
<description>wavelet analyzes image stacks</description>
    <macros>
        <token name="@TOOL_VERSION@">0.1.2</token>
        <token name="@VERSION_SUFFIX@">1</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">spyboat</requirement>
    </requirements>

    To limit the number of Wavelet transformations (computing time), downscaling of the input movie resolution is recommended. 
    Trimming away parts of the movie with no relevant data (e.g. outer dark edges) also speeds up the processing.

    If multiple channels are present in your data, extract the channel of interest beforehand (e.g. with Fiji).

    **Author**: Gregor Mönke (github.com/tensionhead).

    **SpyBOAT repository**: https://github.com/tensionhead/SpyBOAT

    **Wrapper by**: Jelle Scholtalbers ([e-mail]).

    **Know what you are doing**

    - Smallest Period:
        The minimal period to scan for, this is the higher (in frequency) end of the spectrum. A warning will be given during processing if the chosen value deceeds the Nyquist limit (2 times the sampling interval).

    - Largest period:
        The maximal period to scan for, this is the lower (in frequency) end of the spectrum. A warning will be given during processing if the chosen value exceeds the length of the time series.

    - Number of periods to scan for:
        This is the the number of convolutions computed per pixel.

        Spectral resolution =  ( biggest period - smallest period ) / number of periods