comparison spyboat_cli.py @ 1:639d2031d998 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"

0:76733d05d8ef

    if arguments.report_img_path != '.':
        logger.info(f'Creating report directory {arguments.report_img_path}')
        os.mkdir(arguments.report_img_path)

        # 4 snapshots each
    Nsnap = 7
    NFrames = movie.shape[0]
    # show only frames at least one Tmin
    # away from the edge (-effects)
    start_frame = int(Wkwargs['Tmin'] / Wkwargs['dt'])

        start_frame = 0

    frame_increment = int((NFrames - 2 * start_frame) / Nsnap)
    snapshot_frames = range(start_frame, NFrames - start_frame, frame_increment)

    for snapshot_frame in snapshot_frames:
        output_report.produce_snapshots(movie, results, snapshot_frame, Wkwargs, img_path=arguments.report_img_path)

    output_report.produce_distr_plots(results, Wkwargs, img_path=arguments.report_img_path)

    output_report.create_html(snapshot_frames, arguments.html_fname)

except FileExistsError as e:
    logger.critical(f"Could not create html report directory: {repr(e)}")

# --- save out result movies ---

1:639d2031d998

    if arguments.report_img_path != '.':
        logger.info(f'Creating report directory {arguments.report_img_path}')
        os.mkdir(arguments.report_img_path)

    # 4 figures per snapshot
    Nsnap = 8
    NFrames = movie.shape[0]
    # show only frames at least one Tmin
    # away from the edge (-effects)
    start_frame = int(Wkwargs['Tmin'] / Wkwargs['dt'])

        start_frame = 0

    frame_increment = int((NFrames - 2 * start_frame) / Nsnap)
    snapshot_frames = range(start_frame, NFrames - start_frame, frame_increment)

    # get all relevant parameters
    par_str = ''
    for arg in vars(arguments):
        if 'out' in arg or 'path' in arg or 'html' in arg:
            continue
        par_str += f'{arg} -> {getattr(arguments, arg)}\n'

    for snapshot_frame in snapshot_frames:
        output_report.produce_snapshots(movie, results, snapshot_frame, Wkwargs, img_path=arguments.report_img_path)

    output_report.produce_distr_plots(results, Wkwargs, img_path=arguments.report_img_path)

    output_report.create_html(snapshot_frames, par_str, arguments.html_fname)

except FileExistsError as e:
    logger.critical(f"Could not create html report directory: {repr(e)}")

# --- save out result movies ---