view run_tests.sh @ 0:76733d05d8ef draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"

#!/usr/bin/env bash


INPUT_PATH='./test-data/test-movie.tif'
SCRIPT_PATH='.'

# set to galaxy defaults!!
python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_out.tif --period_out period_out.tif --dt 1 --Tmin 20 --Tmax 30 --nT 150 --ncpu 6 --Tcutoff 40

# additional paramters
#--masking static --mask_frame 10 --mask_thresh 300 --rescale 80 --gauss_sigma 1

printf "\n"
# printf "\nError examples:\n"