Mercurial > repos > iuc > spyboat
changeset 1:639d2031d998 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
| author | iuc |
|---|---|
| date | Mon, 30 Nov 2020 21:11:23 +0000 |
| parents | 76733d05d8ef |
| children | 4626a83601d4 |
| files | output_report.py spyboat.xml spyboat_cli.py test-data/output1.html |
| diffstat | 4 files changed, 377 insertions(+), 208 deletions(-) [+] |
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--- a/output_report.py Sat Nov 28 13:45:34 2020 +0000 +++ b/output_report.py Mon Nov 30 21:11:23 2020 +0000 @@ -86,7 +86,7 @@ logger.info("Produced 3 distribution plots..") -def create_html(frame_nums, html_fname="OutputReport.html"): +def create_html(frame_nums, par_str, html_fname="OutputReport.html"): """ The html generated assumes the respective png's have been created with 'produce_snapshots' and 'produce_distr_plots' @@ -105,25 +105,25 @@ <div class="snapshot_gallery"> <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> + snapshot_gallery__item--1" style="margin: 0 0"> <img src="input_frame{frame_num}.png" alt="The Input" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> + snapshot_gallery__item--2" style="margin: 0 0"> <img src="phase_frame{frame_num}.png" alt="Phase" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> + snapshot_gallery__item--3" style="margin: 0 0"> <img src="period_frame{frame_num}.png" alt="Period" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> + snapshot_gallery__item--4" style="margin: 0 0"> <img src="amplitude_frame{frame_num}.png" alt="Amplitude" class="snapshot_gallery__img"> </figure> @@ -132,6 +132,18 @@ """ galleries += new_gal + parameter_cells = '' + for line in par_str.split('\n'): + # last str is empty.. + if not line: + break + par_name, par_val = line.split('->') + parameter_cells += f''' + <tr> + <td>{par_name}</td> + <td>{par_val}</td> + </tr>''' + html_string = f""" <html> <!-- this file got automatically created by 'output_report.py' --> @@ -141,7 +153,12 @@ <!--link rel="stylesheet" href="styles.css"--> <style type="text/css"> body{{ margin:10 100; background:whitesmoke; }} - /*body{{ margin:10 100; background:darkslategrey; }}*/ + p{{ + text-align: center; + margin-top: 0.05cm; + margin-bottom: .05cm; + color:#2c2e2e; + }} .center{{ text-align: center; display: block; @@ -150,60 +167,80 @@ width: 100%;}} /* matplotlib output at 1600x1200 */ - .distr_gallery {{ - display: grid; - margin: 0 auto; + .snapshot_gallery {{ + margin: 0 0; text-align: center; - /* border: 1px dashed rgba(4, 4, 4, 0.35); */ - grid-template-columns: repeat(3,1fr); - grid-template-rows: 20vw; - grid-gap: 0px; - column-gap: 0px - }} - .distr_gallery__img {{ - width: 100%; - height: 100%; - object-fit: contain; + display: grid; + grid-template-columns: repeat(2,1fr); + grid-template-rows: repeat(2,27vw); + grid-gap: 5px; }} - - /* matplotlib output at 1600x1200 */ - .snapshot_gallery {{ - display: grid; - margin: 0 auto; - border: 1px dashed rgba(4, 4, 4, 0.35); - text-align: center; - grid-template-columns: repeat(2,1fr); - grid-template-rows: repeat(2,20vw); - grid-gap: 5px; - }} .snapshot_gallery__img {{ width: 100%; height: 100%; object-fit: contain; + margin-top: 5px; + margin-bottom: 15px; }} .subheader{{ text-align:center; font-size: 160%; color:#363333;}} + .centerimg{{ + text-align: center; + width: 65%; + max-width: 400px; + display: block; + padding: 10px; + margin-left: auto; + margin-right: auto; + }} + + .div_distr{{ + text-align: center; + border-radius: 25px; + margin-top: 1cm; + margin: auto; + margin-bottom: 0.5cm; + background-color: #cce1e3; + max-width: 550px; + }} + + .partable{{ + width: 70%; + margin-left: auto; + margin-right: auto; + }} + + tr, td{{ + color:#2c2e2e; + font-size: 110%; + }} + </style> </head> <body> <h1 style="text-align:center; color:#363333">SpyBOAT Results Report</h1> - <hr style="width:50%"> - <h1 class="subheader"> Distribution Dynamics </h1> - <div class="distr_gallery"> - <figure class=”distr_gallery__item distr_gallery__item--1"> - <img src="period_distr.png" alt="Period" class="distr_gallery__img"> - </figure> + <hr style="width:70%"> + + <h1 class="subheader"> Spatial Summary Statistics </h1> + <div class="div_distr"> + <img src="period_distr.png" alt="Period" + class="centerimg"> + <p> Median and quartiles of the estimated periods for each frame </p> + </div> + - <figure class=”distr_gallery__item distr_gallery__item--2"> - <img src="power_distr.png" alt="Power" class="distr_gallery__img"> - </figure> - - <figure class=”distr_gallery__item distr_gallery__item--3"> - <img src="phase_distr.png" alt="Phase" class="distr_gallery__img"> - </figure> + <div class="div_distr"> + <img src="power_distr.png" alt="Period" + class="centerimg"> + <p> Median and quartiles of the ridge wavelet power for each frame </p> + </div> + <div class="div_distr"> + <img src="phase_distr.png" alt="Period" + class="centerimg"> + <p> Kuramoto order parameter for the phases estimated for each frame </p> </div> @@ -219,6 +256,17 @@ {galleries} </div> + <h1 class="subheader"> Parameters </h1> + <div class="div_distr"> + <table border = "1" class="partable"> + <tr> + <th>Name</th> + <th>Value</th> + </tr> + {parameter_cells} + </table> + </div> + <!-- javascript with escaped '{{'---> <script> var slideIndex = 1; @@ -250,4 +298,4 @@ return html_string # for local testing -# create_html([0,20,40,60,80]) +# create_html([0,20], 'par1 -> val1\n verylongpar2 -> val2')
--- a/spyboat.xml Sat Nov 28 13:45:34 2020 +0000 +++ b/spyboat.xml Mon Nov 30 21:11:23 2020 +0000 @@ -1,5 +1,5 @@ -<tool id="spyboat" name="SpyBOAT" version="@TOOL_VERSION@" profile="20.01" license="GPL-3.0-or-later"> -<description>wavelet transforms image stacks</description> +<tool id="spyboat" name="SpyBOAT" version="@TOOL_VERSION@" profile="20.01" license="GPL-3.0-or-later"> +<description>wavelet analyzes image stacks</description> <macros> <token name="@TOOL_VERSION@">0.1.1</token> </macros> @@ -75,21 +75,21 @@ argparse parser in spyboat_cli.py --> <section name="PreProc" title="Preprocessing" expanded="true"> - <param argument="gauss_sigma" type="float" min="0" max="9999999" optional="true" label="Sigma" + <param argument="gauss_sigma" type="float" min="0" max="100" optional="true" label="Sigma" help="Width of the Gaussian smoothing kernel, leave blank if no pre-smoothing desired" /> <param argument="rescale_factor" type="integer" value="" min="0" max="99" optional="true" label="Rescale factor" help="Downsamples the input movie by this factor given in %, leave blank to disable downsampling" /> </section> <section name="wavana" title="Wavelet Analysis" expanded="true"> - <param name="dt" type="float" value="1" min="0" max="9999999" label="Sampling interval" help="Time span between two frames" /> - <param name="tmin" type="float" value="20" min="0" max="9999999" label="Smallest period" help="Lowest period for the wavelet transform" /> - <param name="tmax" type="float" value="30" min="0" max="9999999" label="Largest period" + <param name="dt" type="float" value="1" min="0" max="1000" label="Sampling interval" help="Time span between two frames" /> + <param name="tmin" type="float" value="20" min="0" max="2000" label="Smallest period" help="Lowest period for the wavelet transform" /> + <param name="tmax" type="float" value="30" min="0" max="10000" label="Largest period" help="Largest period for the wavelet transform" /> - <param name="nt" type="integer" value="150" min="0" max="9999999" label="Number of periods to scan for" + <param name="nt" type="integer" value="150" min="0" max="1000" label="Number of periods to scan for" help="Determines period resolution of the Wavelet power spectra" /> - <param name="tcutoff" type="float" value="40" min="0" max="9999999" label="T cutoff" + <param name="tcutoff" type="float" value="40" min="0" max="10000" label="T cutoff" help="Cut-off-period for sinc filter detrending, a blank field disables detrending" optional="true" /> - <param name="win_size" type="float" value="" min="0" max="9999999" optional="true" label="Sliding window size" + <param name="win_size" type="float" value="" min="0" max="10000" optional="true" label="Sliding window size" help="Window size for amplitude envelope estimation, leave blank to disable normalization" /> </section> <conditional name="masking"> @@ -100,17 +100,17 @@ </param> <when value="no_masking" /> <when value="create_static_mask"> - <param name="mask_frame" type="integer" value="1" min="1" max="99999" label="Create mask from frame" + <param name="mask_frame" type="integer" value="1" min="1" max="5000" label="Create mask from frame" help="Creates a static mask from the chosen frame of the input movie." /> - <param name="mask_thresh" type="float" value="0" min="0" max="999999" label="Threshold" + <param name="mask_thresh" type="float" value="0" min="0" max="65000" label="Threshold" help="All pixels below this threshold will be masked in the output." /> </when> <when value="create_dynamic_mask"> - <param name="mask_thresh" type="float" value="0" min="0" max="999999" label="Threshold" + <param name="mask_thresh" type="float" value="0" min="0" max="65000" label="Threshold" help="For each frame of the input, all pixels below this threshold will be masked in the output." /> </when> </conditional> - <param name="outputs" type="select" optional="true" multiple="true" label="Select optional outputs" help=""> + <param name="outputs" type="select" optional="true" multiple="true" label="Select optional outputs" help="" display="checkboxes"> <option value="save_phase">Phase Movie</option> <option value="save_period">Period Movie</option> <option value="save_amplitude">Amplitude Movie</option> @@ -121,19 +121,19 @@ <outputs> <data name="phase_out" format="tiff" label="${movie.name[:-4]}_phase"> - <filter>'save_phase' in ouputs</filter> + <filter>outputs and 'save_phase' in outputs</filter> </data> <data name="period_out" format="tiff" label="${movie.name[:-4]}_period"> - <filter>'save_period' in outputs</filter> + <filter>outputs and 'save_period' in outputs</filter> </data> <data name="power_out" format="tiff" label="${movie.name[:-4]}_power"> - <filter>'save_power' in outputs</filter> + <filter>outputs and "save_power" in outputs</filter> </data> <data name="amplitude_out" format="tiff" label="${movie.name[:-4]}_amplitude"> - <filter>'save_amplitude' in outputs</filter> + <filter>outputs and 'save_amplitude' in outputs</filter> </data> <data name="preprocessed_out" format="tiff" label="${movie.name[:-4]}_preproc"> - <filter>'save_preprocessed' in outputs</filter> + <filter>outputs and 'save_preprocessed' in outputs</filter> </data> <data name="html_out" format="html" label="Report ${movie.name[:-4]}" /> </outputs> @@ -168,7 +168,6 @@ <has_size value="1764430" delta="100" /> </assert_contents> </output> - <output name="html_out" file="output1.html" ftype="html"/> </test> <test expect_num_outputs="4"> <section name="wavana"> @@ -186,7 +185,6 @@ <has_size value="1764430" delta="100" /> </assert_contents> </output> - <output name="html_out" file="output1.html" ftype="html"/> </test> </tests> <help><![CDATA[
--- a/spyboat_cli.py Sat Nov 28 13:45:34 2020 +0000 +++ b/spyboat_cli.py Mon Nov 30 21:11:23 2020 +0000 @@ -165,8 +165,8 @@ logger.info(f'Creating report directory {arguments.report_img_path}') os.mkdir(arguments.report_img_path) - # 4 snapshots each - Nsnap = 7 + # 4 figures per snapshot + Nsnap = 8 NFrames = movie.shape[0] # show only frames at least one Tmin # away from the edge (-effects) @@ -180,12 +180,19 @@ frame_increment = int((NFrames - 2 * start_frame) / Nsnap) snapshot_frames = range(start_frame, NFrames - start_frame, frame_increment) + # get all relevant parameters + par_str = '' + for arg in vars(arguments): + if 'out' in arg or 'path' in arg or 'html' in arg: + continue + par_str += f'{arg} -> {getattr(arguments, arg)}\n' + for snapshot_frame in snapshot_frames: output_report.produce_snapshots(movie, results, snapshot_frame, Wkwargs, img_path=arguments.report_img_path) output_report.produce_distr_plots(results, Wkwargs, img_path=arguments.report_img_path) - output_report.create_html(snapshot_frames, arguments.html_fname) + output_report.create_html(snapshot_frames, par_str, arguments.html_fname) except FileExistsError as e: logger.critical(f"Could not create html report directory: {repr(e)}")
--- a/test-data/output1.html Sat Nov 28 13:45:34 2020 +0000 +++ b/test-data/output1.html Mon Nov 30 21:11:23 2020 +0000 @@ -7,7 +7,12 @@ <!--link rel="stylesheet" href="styles.css"--> <style type="text/css"> body{ margin:10 100; background:whitesmoke; } - /*body{ margin:10 100; background:darkslategrey; }*/ + p{ + text-align: center; + margin-top: 0.05cm; + margin-bottom: .05cm; + color:#2c2e2e; + } .center{ text-align: center; display: block; @@ -16,60 +21,80 @@ width: 100%;} /* matplotlib output at 1600x1200 */ - .distr_gallery { - display: grid; - margin: 0 auto; + .snapshot_gallery { + margin: 0 0; text-align: center; - /* border: 1px dashed rgba(4, 4, 4, 0.35); */ - grid-template-columns: repeat(3,1fr); - grid-template-rows: 20vw; - grid-gap: 0px; - column-gap: 0px - } - .distr_gallery__img { - width: 100%; - height: 100%; - object-fit: contain; + display: grid; + grid-template-columns: repeat(2,1fr); + grid-template-rows: repeat(2,27vw); + grid-gap: 5px; } - - /* matplotlib output at 1600x1200 */ - .snapshot_gallery { - display: grid; - margin: 0 auto; - border: 1px dashed rgba(4, 4, 4, 0.35); - text-align: center; - grid-template-columns: repeat(2,1fr); - grid-template-rows: repeat(2,20vw); - grid-gap: 5px; - } .snapshot_gallery__img { width: 100%; height: 100%; object-fit: contain; + margin-top: 5px; + margin-bottom: 15px; } .subheader{ text-align:center; font-size: 160%; color:#363333;} + .centerimg{ + text-align: center; + width: 65%; + max-width: 400px; + display: block; + padding: 10px; + margin-left: auto; + margin-right: auto; + } + + .div_distr{ + text-align: center; + border-radius: 25px; + margin-top: 1cm; + margin: auto; + margin-bottom: 0.5cm; + background-color: #cce1e3; + max-width: 550px; + } + + .partable{ + width: 70%; + margin-left: auto; + margin-right: auto; + } + + tr, td{ + color:#2c2e2e; + font-size: 110%; + } + </style> </head> <body> <h1 style="text-align:center; color:#363333">SpyBOAT Results Report</h1> - <hr style="width:50%"> - <h1 class="subheader"> Distribution Dynamics </h1> - <div class="distr_gallery"> - <figure class=”distr_gallery__item distr_gallery__item--1"> - <img src="period_distr.png" alt="Period" class="distr_gallery__img"> - </figure> + <hr style="width:70%"> + + <h1 class="subheader"> Spatial Summary Statistics </h1> + <div class="div_distr"> + <img src="period_distr.png" alt="Period" + class="centerimg"> + <p> Median and quartiles of the estimated periods for each frame </p> + </div> + - <figure class=”distr_gallery__item distr_gallery__item--2"> - <img src="power_distr.png" alt="Power" class="distr_gallery__img"> - </figure> - - <figure class=”distr_gallery__item distr_gallery__item--3"> - <img src="phase_distr.png" alt="Phase" class="distr_gallery__img"> - </figure> + <div class="div_distr"> + <img src="power_distr.png" alt="Period" + class="centerimg"> + <p> Median and quartiles of the ridge wavelet power for each frame </p> + </div> + <div class="div_distr"> + <img src="phase_distr.png" alt="Period" + class="centerimg"> + <p> Kuramoto order parameter for the phases estimated for each frame </p> </div> @@ -90,25 +115,25 @@ <div class="snapshot_gallery"> <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> + snapshot_gallery__item--1" style="margin: 0 0"> <img src="input_frame20.png" alt="The Input" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> + snapshot_gallery__item--2" style="margin: 0 0"> <img src="phase_frame20.png" alt="Phase" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> + snapshot_gallery__item--3" style="margin: 0 0"> <img src="period_frame20.png" alt="Period" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> + snapshot_gallery__item--4" style="margin: 0 0"> <img src="amplitude_frame20.png" alt="Amplitude" class="snapshot_gallery__img"> </figure> @@ -117,31 +142,31 @@ <div class="FrameSlides"> <h3 style="text-align:center; color=#363333"> - Frame Nr. 28 </h3> + Frame Nr. 27 </h3> <div class="snapshot_gallery"> <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> - <img src="input_frame28.png" alt="The Input" + snapshot_gallery__item--1" style="margin: 0 0"> + <img src="input_frame27.png" alt="The Input" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> - <img src="phase_frame28.png" alt="Phase" + snapshot_gallery__item--2" style="margin: 0 0"> + <img src="phase_frame27.png" alt="Phase" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> - <img src="period_frame28.png" + snapshot_gallery__item--3" style="margin: 0 0"> + <img src="period_frame27.png" alt="Period" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> - <img src="amplitude_frame28.png" + snapshot_gallery__item--4" style="margin: 0 0"> + <img src="amplitude_frame27.png" alt="Amplitude" class="snapshot_gallery__img"> </figure> </div> @@ -149,31 +174,95 @@ <div class="FrameSlides"> <h3 style="text-align:center; color=#363333"> - Frame Nr. 36 </h3> + Frame Nr. 34 </h3> <div class="snapshot_gallery"> <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> - <img src="input_frame36.png" alt="The Input" + snapshot_gallery__item--1" style="margin: 0 0"> + <img src="input_frame34.png" alt="The Input" + class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--2" style="margin: 0 0"> + <img src="phase_frame34.png" alt="Phase" + class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--3" style="margin: 0 0"> + <img src="period_frame34.png" + alt="Period" class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--4" style="margin: 0 0"> + <img src="amplitude_frame34.png" + alt="Amplitude" class="snapshot_gallery__img"> + </figure> + </div> + </div> + + <div class="FrameSlides"> + <h3 style="text-align:center; color=#363333"> + Frame Nr. 41 </h3> + + <div class="snapshot_gallery"> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--1" style="margin: 0 0"> + <img src="input_frame41.png" alt="The Input" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> - <img src="phase_frame36.png" alt="Phase" + snapshot_gallery__item--2" style="margin: 0 0"> + <img src="phase_frame41.png" alt="Phase" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> - <img src="period_frame36.png" + snapshot_gallery__item--3" style="margin: 0 0"> + <img src="period_frame41.png" alt="Period" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> - <img src="amplitude_frame36.png" + snapshot_gallery__item--4" style="margin: 0 0"> + <img src="amplitude_frame41.png" + alt="Amplitude" class="snapshot_gallery__img"> + </figure> + </div> + </div> + + <div class="FrameSlides"> + <h3 style="text-align:center; color=#363333"> + Frame Nr. 48 </h3> + + <div class="snapshot_gallery"> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--1" style="margin: 0 0"> + <img src="input_frame48.png" alt="The Input" + class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--2" style="margin: 0 0"> + <img src="phase_frame48.png" alt="Phase" + class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--3" style="margin: 0 0"> + <img src="period_frame48.png" + alt="Period" class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--4" style="margin: 0 0"> + <img src="amplitude_frame48.png" alt="Amplitude" class="snapshot_gallery__img"> </figure> </div> @@ -181,31 +270,63 @@ <div class="FrameSlides"> <h3 style="text-align:center; color=#363333"> - Frame Nr. 44 </h3> + Frame Nr. 55 </h3> <div class="snapshot_gallery"> <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> - <img src="input_frame44.png" alt="The Input" + snapshot_gallery__item--1" style="margin: 0 0"> + <img src="input_frame55.png" alt="The Input" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> - <img src="phase_frame44.png" alt="Phase" + snapshot_gallery__item--2" style="margin: 0 0"> + <img src="phase_frame55.png" alt="Phase" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> - <img src="period_frame44.png" + snapshot_gallery__item--3" style="margin: 0 0"> + <img src="period_frame55.png" alt="Period" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> - <img src="amplitude_frame44.png" + snapshot_gallery__item--4" style="margin: 0 0"> + <img src="amplitude_frame55.png" + alt="Amplitude" class="snapshot_gallery__img"> + </figure> + </div> + </div> + + <div class="FrameSlides"> + <h3 style="text-align:center; color=#363333"> + Frame Nr. 62 </h3> + + <div class="snapshot_gallery"> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--1" style="margin: 0 0"> + <img src="input_frame62.png" alt="The Input" + class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--2" style="margin: 0 0"> + <img src="phase_frame62.png" alt="Phase" + class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--3" style="margin: 0 0"> + <img src="period_frame62.png" + alt="Period" class="snapshot_gallery__img"> + </figure> + + <figure class=”snapshot_gallery__item + snapshot_gallery__item--4" style="margin: 0 0"> + <img src="amplitude_frame62.png" alt="Amplitude" class="snapshot_gallery__img"> </figure> </div> @@ -213,100 +334,95 @@ <div class="FrameSlides"> <h3 style="text-align:center; color=#363333"> - Frame Nr. 52 </h3> + Frame Nr. 69 </h3> <div class="snapshot_gallery"> <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> - <img src="input_frame52.png" alt="The Input" + snapshot_gallery__item--1" style="margin: 0 0"> + <img src="input_frame69.png" alt="The Input" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> - <img src="phase_frame52.png" alt="Phase" + snapshot_gallery__item--2" style="margin: 0 0"> + <img src="phase_frame69.png" alt="Phase" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> - <img src="period_frame52.png" + snapshot_gallery__item--3" style="margin: 0 0"> + <img src="period_frame69.png" alt="Period" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> - <img src="amplitude_frame52.png" + snapshot_gallery__item--4" style="margin: 0 0"> + <img src="amplitude_frame69.png" alt="Amplitude" class="snapshot_gallery__img"> </figure> </div> </div> - <div class="FrameSlides"> - <h3 style="text-align:center; color=#363333"> - Frame Nr. 60 </h3> - - <div class="snapshot_gallery"> - - <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> - <img src="input_frame60.png" alt="The Input" - class="snapshot_gallery__img"> - </figure> - - <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> - <img src="phase_frame60.png" alt="Phase" - class="snapshot_gallery__img"> - </figure> - - <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> - <img src="period_frame60.png" - alt="Period" class="snapshot_gallery__img"> - </figure> + </div> - <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> - <img src="amplitude_frame60.png" - alt="Amplitude" class="snapshot_gallery__img"> - </figure> - </div> - </div> - - <div class="FrameSlides"> - <h3 style="text-align:center; color=#363333"> - Frame Nr. 68 </h3> - - <div class="snapshot_gallery"> - - <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> - <img src="input_frame68.png" alt="The Input" - class="snapshot_gallery__img"> - </figure> - - <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> - <img src="phase_frame68.png" alt="Phase" - class="snapshot_gallery__img"> - </figure> - - <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> - <img src="period_frame68.png" - alt="Period" class="snapshot_gallery__img"> - </figure> - - <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> - <img src="amplitude_frame68.png" - alt="Amplitude" class="snapshot_gallery__img"> - </figure> - </div> - </div> - + <h1 class="subheader"> Parameters </h1> + <div class="div_distr"> + <table border = "1" class="partable"> + <tr> + <th>Name</th> + <th>Value</th> + </tr> + + <tr> + <td>ncpu </td> + <td> 1</td> + </tr> + <tr> + <td>rescale_factor </td> + <td> None</td> + </tr> + <tr> + <td>gauss_sigma </td> + <td> None</td> + </tr> + <tr> + <td>dt </td> + <td> 1.0</td> + </tr> + <tr> + <td>Tmin </td> + <td> 20.0</td> + </tr> + <tr> + <td>Tmax </td> + <td> 30.0</td> + </tr> + <tr> + <td>nT </td> + <td> 150</td> + </tr> + <tr> + <td>Tcutoff </td> + <td> 40.0</td> + </tr> + <tr> + <td>win_size </td> + <td> None</td> + </tr> + <tr> + <td>masking </td> + <td> None</td> + </tr> + <tr> + <td>mask_frame </td> + <td> None</td> + </tr> + <tr> + <td>mask_thresh </td> + <td> 0</td> + </tr> + </table> </div> <!-- javascript with escaped '{'--->