annotate macros.xml @ 15:c4d18aa4ec4a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
author iuc
date Thu, 27 Jun 2024 17:23:20 +0000
parents f768f6183386
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
1 <macros>
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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2 <token name="@LINEFILTERS@">
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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3 <![CDATA[
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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4 ## set linefilters to the
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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5 #set $input_filters = []
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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6 #for $fi in $linefilters:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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7 #if $fi.filter.filter_type == 'skip':
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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8 #set $skip_lines = None
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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9 #if str($fi.filter.skip_lines) != '':
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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10 #set $skip_lines = int($fi.filter.skip_lines)
15
c4d18aa4ec4a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
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11 #elif $table.metadata.comment_lines and int($table.metadata.comment_lines) > 0:
c4d18aa4ec4a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
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12 #set $skip_lines = int($table.metadata.comment_lines)
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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13 #end if
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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14 #if $skip_lines is not None:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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15 #set $filter_dict = dict()
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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16 #set $filter_dict['filter'] = str($fi.filter.filter_type)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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17 #set $filter_dict['count'] = $skip_lines
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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18 #silent $input_filters.append($filter_dict)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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19 #end if
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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20 #elif $fi.filter.filter_type == 'comment':
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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21 #set $filter_dict = dict()
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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22 #set $filter_dict['filter'] = 'regex'
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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23 #set $filter_dict['pattern'] = '^(%s).*$' % '|'.join([chr(int(x)).replace('|','[|]') for x in (str($fi.filter.comment_char)).split(',')])
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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24 #set $filter_dict['action'] = 'exclude_match'
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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25 #silent $input_filters.append($filter_dict)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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26 #elif $fi.filter.filter_type == 'regex':
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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27 #set $filter_dict = dict()
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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28 #set $filter_dict['filter'] = str($fi.filter.filter_type)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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29 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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30 #set $filter_dict['action'] = str($fi.filter.regex_action)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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31 #silent $input_filters.append($filter_dict)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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32 #elif $fi.filter.filter_type == 'select_columns':
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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33 #set $filter_dict = dict()
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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34 #set $filter_dict['filter'] = str($fi.filter.filter_type)
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c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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35 #set $filter_dict['columns'] = [int($c) for $c in str($fi.filter.columns).replace('c','').split(',')]
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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36 #silent $input_filters.append($filter_dict)
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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37 #elif $fi.filter.filter_type == 'select_column_slices':
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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38 #set $filter_dict = dict()
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 12
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39 #set $filter_dict['filter'] = str($fi.filter.filter_type)
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 12
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40 #set $filter_dict['columns'] = [$c for $c in str($fi.filter.columns).split(',')]
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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41 #silent $input_filters.append($filter_dict)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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42 #elif $fi.filter.filter_type == 'replace':
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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43 #set $filter_dict = dict()
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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44 #set $filter_dict['filter'] = str($fi.filter.filter_type)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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45 #set $filter_dict['column'] = int(str($fi.filter.column).replace('c',''))
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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46 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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47 #set $filter_dict['replace'] = str($fi.filter.regex_replace)
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4678715f7147 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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48 #if $fi.filter.add:
4678715f7147 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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49 #set $filter_dict['add'] = str($fi.filter.add)
4678715f7147 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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50 #end if
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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51 #silent $input_filters.append($filter_dict)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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52 #elif str($fi.filter.filter_type).endswith('pend_line_num'):
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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53 #set $filter_dict = dict()
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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54 #set $filter_dict['filter'] = str($fi.filter.filter_type)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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55 #silent $input_filters.append($filter_dict)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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56 #elif str($fi.filter.filter_type).endswith('pend_text'):
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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57 #set $filter_dict = dict()
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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58 #set $filter_dict['filter'] = str($fi.filter.filter_type)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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59 #set $filter_dict['column_text'] = str($fi.filter.column_text)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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60 #silent $input_filters.append($filter_dict)
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c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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61 #elif str($fi.filter.filter_type).endswith('pend_dataset_name'):
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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62 #set $filter_dict = dict()
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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63 #set $filter_dict['filter'] = str($fi.filter.filter_type).replace('dataset_name', 'text')
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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64 #set $filter_dict['column_text'] = $dataset_name
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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65 #silent $input_filters.append($filter_dict)
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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66 #elif $fi.filter.filter_type == 'normalize':
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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67 #set $filter_dict = dict()
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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68 #set $filter_dict['filter'] = str($fi.filter.filter_type)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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69 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')]
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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70 #set $filter_dict['separator'] = str($fi.filter.separator)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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71 #silent $input_filters.append($filter_dict)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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72 #end if
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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73 #end for
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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74 ]]>
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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75 </token>
1
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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76 <token name="@RESULT_HEADER@">
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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77 <![CDATA[
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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78 #if $query_result.header == 'yes':
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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79 #if $query_result.header_prefix:
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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80 #set $header_prefix = chr(int(str($query_result.header_prefix)))
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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81 --comment_char='$header_prefix'
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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82 #end if
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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83 #else
c1b700bc0150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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84 --no_header
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85 #end if
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86 ]]>
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87 </token>
8
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88 <xml name="requirements">
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89 <requirements>
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90 <requirement type="package" version="3.7">python</requirement>
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91 </requirements>
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92 </xml>
1
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93 <xml name="comment_char_options">
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94 <option value="62">&gt;</option>
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95 <option value="64">@</option>
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96 <option value="43">+</option>
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97 <option value="60">&lt;</option>
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98 <option value="42">*</option>
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99 <option value="45">-</option>
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100 <option value="61">=</option>
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101 <option value="124">|</option>
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102 <option value="63">?</option>
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103 <option value="36">$</option>
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104 <option value="46">.</option>
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105 <option value="58">:</option>
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106 <option value="38">&amp;</option>
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107 <option value="37">%</option>
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108 <option value="94">^</option>
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109 <option value="35" selected="true">&#35;</option>
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110 <option value="33">!</option>
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111 </xml>
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112 <xml name="result_results_header_line">
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113 <conditional name="query_result">
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114 <param name="header" type="select" label="include query result column headers">
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115 <option value="yes">Yes</option>
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116 <option value="no">No</option>
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117 </param>
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118 <when value="yes">
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119 <param name="header_prefix" type="select" optional="true" label="Prefix character for column_header line">
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120 <option value="">no comment character prefix</option>
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121 <expand macro="comment_char_options" />
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122 </param>
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123 </when>
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124 <when value="no"/>
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125 </conditional>
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126 </xml>
4
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127 <xml name="sql_query_input">
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128 <param name="sqlquery" type="text" area="true" size="20x80" value="" optional="true" label="SQL Query to generate tabular output">
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129 <help>By default: tables are named: t1,t2,...,tn and columns in each table: c1,c2,...,cn</help>
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130 <sanitizer sanitize="False"/>
14
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131 <validator type="regex" message="">(?ims)^\s*select\s+.*\s+from\s+.*$</validator>
4
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132 </param>
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133 </xml>
0
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134 <xml name="macro_line_filters">
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135 <repeat name="linefilters" title="Filter Tabular Input Lines">
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136 <conditional name="filter">
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137 <param name="filter_type" type="select" label="Filter By">
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138 <option value="skip">skip leading lines</option>
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139 <option value="comment">comment char</option>
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140 <option value="regex">by regex expression matching</option>
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141 <option value="select_columns">select columns</option>
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142 <option value="select_column_slices">select columns by indices/slices</option>
0
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143 <option value="replace">regex replace value in column</option>
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144 <option value="prepend_line_num">prepend a line number column</option>
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145 <option value="append_line_num">append a line number column</option>
13
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146 <option value="prepend_dataset_name">prepend a column with the dataset name</option>
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147 <option value="append_dataset_name">append a column with the dataset name</option>
0
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148 <option value="prepend_text">prepend a column with the given text</option>
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149 <option value="append_text">append a column with the given text</option>
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150 <option value="normalize">normalize list columns, replicates row for each item in list</option>
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151 </param>
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152 <when value="skip">
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153 <param name="skip_lines" type="integer" value="" min="0" optional="true" label="Skip lines"
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154 help="Leave blank to use the comment lines metadata for this dataset" />
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155 </when>
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156 <when value="comment">
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157 <param name="comment_char" type="select" display="checkboxes" multiple="True" label="Ignore lines beginning with these characters" help="lines beginning with these are skipped">
1
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158 <expand macro="comment_char_options" />
0
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159 </param>
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160 </when>
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161 <when value="prepend_line_num"/>
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162 <when value="append_line_num"/>
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163 <when value="prepend_dataset_name"/>
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164 <when value="append_dataset_name"/>
0
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165 <when value="prepend_text">
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166 <param name="column_text" type="text" value="" label="text for column">
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167 </param>
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168 </when>
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169 <when value="append_text">
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170 <param name="column_text" type="text" value="" label="text for column">
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171 </param>
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172 </when>
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173 <when value="regex">
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174 <param name="regex_pattern" type="text" value="" label="regex pattern">
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175 <sanitizer sanitize="False"/>
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176 </param>
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177 <param name="regex_action" type="select" label="action for regex match">
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178 <option value="exclude_match">exclude line on pattern match</option>
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179 <option value="include_match">include line on pattern match</option>
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180 <option value="exclude_find">exclude line if pattern found</option>
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181 <option value="include_find">include line if pattern found</option>
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182 </param>
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183 </when>
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184 <when value="select_columns">
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185 <param name="columns" type="text" value="" label="enter column numbers to keep"
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186 help="example: 1,4,2 or c1,c4,c2(selects the first,fourth, and second columns)">
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187 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d*)(,c?[1-9]\d*)*$</validator>
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188 </param>
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189 </when>
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190 <when value="select_column_slices">
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191 <param name="columns" type="text" value="" label="enter indices or slices of the columns to keep">
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192 <help><![CDATA[ Python offset indexes or slices. Examples:
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193 <ul>
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194 <li>Column offset indexes: 0,3,1 (selects the first,fourth, and second columns)</li>
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195 <li>Negative column numbers: -1,-2 (selects the last, and second last columns)</li>
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196 <li>python slices ( slice(start, stop[, step]) select a range of columns): <li>
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197 <ul>
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198 <li>0:3 or :3 (selects the first 3 columns)</li>
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199 <li>3:5 (selects the fourth and fifth columns)</li>
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200 <li>2: (selects all columns after the second)</li>
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201 <li>-2: (selects the last 2 columns)</li>
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202 <li>2::-1 (selects the first 3 columns n reverse order: third,second,first)</li>
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203 </ul>
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204 </ul>
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205 ]]></help>
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206 <validator type="regex" message="Column ordinal positions separated by commas">^(-?[1-9]\d*|((-?\d+)?:(-?\d*(:-?\d*)?)))(,(-?[1-9]\d*|((-?\d+)?:(-?\d*(:-?\d*)?))))*$</validator>
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207 </param>
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208 </when>
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209
0
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210 <when value="replace">
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211 <param name="column" type="text" value="" label="enter column number to replace"
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212 help="example: 1 or c1 (selects the first column)">
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213 <validator type="regex" message="Column ordinal position">^(c?[1-9]\d*)$</validator>
0
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214 </param>
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215 <param name="regex_pattern" type="text" value="" label="regex pattern">
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216 <sanitizer sanitize="False"/>
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217 </param>
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218 <param name="regex_replace" type="text" value="" label="replacement expression">
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219 <sanitizer sanitize="False"/>
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220 </param>
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221 <param name="add" type="select" optional="true" label="Instead of replacing, Add as new column:">
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222 <option value="prepend">prepend to beginning of row</option>
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223 <option value="append">append to the end of row</option>
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224 <option value="before">insert before column field</option>
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225 <option value="after">insert after column field</option>
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226 </param>
0
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227 </when>
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228 <when value="normalize">
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229 <param name="columns" type="text" value="" label="enter column numbers to normalize">
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230 <help><![CDATA[
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231 example: 2,4 or c2,c4 (selects the second, and fourth columns)
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232 If multiple columns are selected, they should have the same length and separator on each line
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233 ]]></help>
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234 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d*)(,c?[1-9]\d*)*$</validator>
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235 </param>
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236 <param name="separator" type="text" value="," label="List item delimiter in column">
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237 <sanitizer sanitize="False"/>
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238 <validator type="regex" message="Anything but TAB or Newline">^[^\t\n\r\f\v]+$</validator>
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239 </param>
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240 </when>
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241 </conditional>
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242 </repeat>
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243 </xml>
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244
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245 <token name="@LINEFILTERS_HELP@">
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246 <![CDATA[
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247 **Input Line Filters**
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248
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249 As a tabular file is being read, line filters may be applied:
0
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250
13
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251 - skip leading lines - skip the first *number* of lines
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252 - comment char - omit any lines that start with the specified comment character
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253 - by regex expression matching - *include/exclude* lines that match the regex expression
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254 - select columns - choose to include only selected columns in the order specified
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255 - select columns by indices/slices - *indices or slices* of the columns to keep (python_list_ indexing)
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256 - regex replace value in column - replace a field in a column using a regex substitution (good for date reformatting)
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257 - regex replace value in column - add a new column using a regex substitution of a column value
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258 - prepend a line number column - each line has the *ordinal* value of the line read by this filter as the first column
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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259 - append a line number column - each line has the *ordinal* value of the line read by this filter as the last column
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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260 - prepend a text column - each line has the text string as the first column
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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261 - append a text column - each line has the text string as the last column
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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262 - prepend the dataset name - each line has the *dataset name* as the first column
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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263 - append the dataset name - each line has the *dataset name* as the last column
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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264 - normalize list columns - replicates the line for each item in the specified list *columns*
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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265
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
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266 .. _python_list: https://docs.python.org/3/library/stdtypes.html#common-sequence-operations
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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267 ]]>
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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268 </token>
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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269
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270 <token name="@LINEFILTERS_HELP_EXAMPLE@">
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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271 <![CDATA[
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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272 **Line Filtering Example**
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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273 *(Six filters are applied as the following file is read)*
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274
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275 ::
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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276
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277 Input Tabular File:
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278
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279 #People with pets
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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280 Pets FirstName LastName DOB PetNames PetType
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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281 2 Paula Brown 24/05/78 Rex,Fluff dog,cat
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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282 1 Steven Jones 04/04/74 Allie cat
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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283 0 Jane Doe 24/05/78
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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284 1 James Smith 20/10/80 Spot
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285
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286
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287 Filter 1 - append a line number column:
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288
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289 #People with pets 1
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290 Pets FirstName LastName DOB PetNames PetType 2
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291 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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292 1 Steven Jones 04/04/74 Allie cat 4
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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293 0 Jane Doe 24/05/78 5
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294 1 James Smith 20/10/80 Spot 6
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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295
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296 Filter 2 - by regex expression matching [include]: '^\d+' (include lines that start with a number)
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297
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298 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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299 1 Steven Jones 04/04/74 Allie cat 4
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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300 0 Jane Doe 24/05/78 5
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301 1 James Smith 20/10/80 Spot 6
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302
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303 Filter 3 - append a line number column:
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304
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305 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3 1
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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306 1 Steven Jones 04/04/74 Allie cat 4 2
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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307 0 Jane Doe 24/05/78 5 3
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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308 1 James Smith 20/10/80 Spot 6 4
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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309
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310 Filter 4 - regex replace value in column[4]: '(\d+)/(\d+)/(\d+)' '19\3-\2-\1' (convert dates to sqlite format)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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311
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iuc
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312 2 Paula Brown 1978-05-24 Rex,Fluff dog,cat 3 1
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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313 1 Steven Jones 1974-04-04 Allie cat 4 2
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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314 0 Jane Doe 1978-05-24 5 3
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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315 1 James Smith 1980-10-20 Spot 6 4
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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316
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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317 Filter 5 - normalize list columns[5,6]:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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318
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iuc
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319 2 Paula Brown 1978-05-24 Rex dog 3 1
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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320 2 Paula Brown 1978-05-24 Fluff cat 3 1
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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321 1 Steven Jones 1974-04-04 Allie cat 4 2
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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322 0 Jane Doe 1978-05-24 5 3
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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323 1 James Smith 1980-10-20 Spot 6 4
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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324
13
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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325 Filter 6 - select columns by indices/slices: '1:6'
0
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326
13
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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327 Paula Brown 1978-05-24 Rex dog
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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328 Paula Brown 1978-05-24 Fluff cat
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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329 Steven Jones 1974-04-04 Allie cat
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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330 Jane Doe 1978-05-24
c29d2f80a066 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
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331 James Smith 1980-10-20 Spot
0
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332
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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333 ]]>
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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334 </token>
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335
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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336 <token name="@QUERY_HELP@">
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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337 <![CDATA[
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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338
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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339 For help in using SQLite_ see: http://www.sqlite.org/docs.html
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340
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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341 **NOTE:** input for SQLite dates input field must be in the format: *YYYY-MM-DD* for example: 2015-09-30
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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342
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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343 See: http://www.sqlite.org/lang_datefunc.html
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344
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345 **Example**
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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346
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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347 Given 2 tabular datasets: *customers* and *sales*
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348
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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349 Dataset *customers*
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
350
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
351 Table name: "customers"
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
352
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
353 Column names: "CustomerID,FirstName,LastName,Email,DOB,Phone"
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
354
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
355 =========== ========== ========== ===================== ========== ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
356 #CustomerID FirstName LastName Email DOB Phone
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
357 =========== ========== ========== ===================== ========== ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
358 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
359 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
360 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
361 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
362 =========== ========== ========== ===================== ========== ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
363
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
364 Dataset *sales*
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
365
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
366 Table name: "sales"
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
367
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
368 Column names: "CustomerID,Date,SaleAmount"
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
369
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
370 ============= ============ ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
371 #CustomerID Date SaleAmount
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
372 ============= ============ ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
373 2 2004-05-06 100.22
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
374 1 2004-05-07 99.95
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
375 3 2004-05-07 122.95
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
376 3 2004-05-13 100.00
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
377 4 2004-05-22 555.55
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
378 ============= ============ ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
379
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
380 The query
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
381
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
382 ::
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
383
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
384 SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales"
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
385 FROM customers join sales on customers.CustomerID = sales.CustomerID
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
386 GROUP BY customers.CustomerID ORDER BY TotalSales DESC;
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
387
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
388 Produces this tabular output:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
389
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
390 ========== ======== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
391 #FirstName LastName TotalSales
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
392 ========== ======== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
393 James Smith 555.55
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
394 Paula Brown 222.95
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
395 Steven Goldfish 100.22
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
396 John Smith 99.95
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
397 ========== ======== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
398
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
399
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
400 If the optional Table name and Column names inputs are not used, the query would be:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
401
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
402 ::
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
403
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
404 SELECT t1.c2 as "FirstName", t1.c3 as "LastName", sum(t2.c3) as "TotalSales"
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
405 FROM t1 join t2 on t1.c1 = t2.c1
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
406 GROUP BY t1.c1 ORDER BY TotalSales DESC;
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
407
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
408 You can selectively name columns, e.g. on the customers input you could just name columns 2,3, and 5:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
409
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
410 Column names: ,FirstName,LastName,,BirthDate
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
411
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
412 Results in the following data base table
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
413
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
414 =========== ========== ========== ===================== ========== ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
415 #c1 FirstName LastName c4 BirthDate c6
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
416 =========== ========== ========== ===================== ========== ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
417 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
418 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
419 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
420 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
421 =========== ========== ========== ===================== ========== ============
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
422
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
423
12
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
424
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
425 Regular_expression_ functions are included for:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
426
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
427 ::
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
428
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
429 matching: re_match('pattern',column)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
430
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
431 SELECT t1.FirstName, t1.LastName
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
432 FROM t1
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
433 WHERE re_match('^.*\.(net|org)$',c4)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
434
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
435 Results:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
436
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
437 =========== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
438 #FirstName LastName
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
439 =========== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
440 Steven Goldfish
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
441 Paula Brown
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
442 =========== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
443
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
444
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
445 ::
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
446
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
447 searching: re_search('pattern',column)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
448 substituting: re_sub('pattern','replacement,column)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
449
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
450 SELECT t1.FirstName, t1.LastName, re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB"
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
451 FROM t1
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
452 WHERE re_search('[hp]er',c4)
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
453
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
454 Results:
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
455
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
456
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
457 =========== ========== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
458 #FirstName LastName DOB
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
459 =========== ========== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
460 Steven Goldfish 04/04/74
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
461 Paula Brown 24/05/78
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
462 James Smith 20/10/80
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
463 =========== ========== ==========
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
464
12
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
465 Math_ functions *( python math library: https://docs.python.org/3.6/library/math.html )*:
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
466
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
467 acos(x), acosh(x), asin(x), asinh(x), atan(x), atanh(x), atan2(x, y), ceil(x), cos(x), cosh(x), degrees(x), exp(x), expm1(x), fabs(x), floor(x), fmod(x, y), log(b,x), log(x), log10(x), log1p(x), log2(x), mod(x, y), pow(x, y), radians(x), sin(x), sinh(x), sqrt(x), tan(x), tanh(x), trunc(x)
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
468
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
469
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
470 ::
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
471
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
472 Query:
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
473
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
474 SELECT SaleAmount, floor(SaleAmount) as "dollars"
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
475 FROM sales
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
476
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
477 Results:
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
478
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
479 ============ ========
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
480 SaleAmount dollars
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
481 ============ ========
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
482 100.22 100
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
483 99.95 99
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
484 122.95 122
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
485 100.00 100
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
486 555.55 555
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
487 ============ ========
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
488
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
489
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
490 .. _Regular_expression: https://docs.python.org/3.9/library/re.html
575cd6cd537c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents: 9
diff changeset
491 .. _Math: https://docs.python.org/3.9/library/math.html
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
492 .. _SQLite: http://www.sqlite.org/index.html
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
493 .. _SQLite_functions: http://www.sqlite.org/docs.html
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
494
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
495
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
496 ]]>
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
497 </token>
6
fe5036ccfdc3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents: 4
diff changeset
498 <xml name="citations">
fe5036ccfdc3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents: 4
diff changeset
499 <citations>
fe5036ccfdc3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents: 4
diff changeset
500 <citation type="doi">10.12688/f1000research.16450.1</citation>
fe5036ccfdc3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents: 4
diff changeset
501 <yield />
fe5036ccfdc3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents: 4
diff changeset
502 </citations>
fe5036ccfdc3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents: 4
diff changeset
503 </xml>
fe5036ccfdc3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents: 4
diff changeset
504
0
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
505
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
506 </macros>
859064f07be4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
507