comparison sqlite_to_tabular.xml @ 1:c1b700bc0150 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845

0:859064f07be4

<?xml version="1.0"?>
<tool id="sqlite_to_tabular" name="SQLite to tabular" version="1.0.0">
    <description>for SQL query</description>

    <macros>
         <import>macros.xml</import>
    </macros>

    <command detect_errors="exit_code"><![CDATA[
    python '$__tool_directory__/sqlite_to_tabular.py'
    --sqlitedb='$sqlitedb' 
    --query_file='$query_file'
    $no_header 
    --output='$query_results'
    ]]></command>
    <configfiles>
        <configfile name="query_file">
$sqlquery

        <param name="sqlitedb" type="data" format="sqlite" label="SQLite Database"/>
        <param name="sqlquery" type="text" area="True" size="120x20" label="SQL query">
            <validator type="regex">(?ims)^\s*SELECT\s.*\sFROM\s.*$</validator>
            <sanitizer sanitize="False"/>
        </param>
        <param name="no_header" type="boolean" truevalue="-n" falsevalue="" checked="False" label="Omit column headers"/>
    </inputs>
    <outputs>
        <data name="query_results" format="tabular" />
    </outputs>
    <tests>

1:c1b700bc0150

<?xml version="1.0"?>
<tool id="sqlite_to_tabular" name="SQLite to tabular" version="2.0.0">
    <description>for SQL query</description>

    <macros>
         <import>macros.xml</import>
    </macros>

    <command detect_errors="exit_code"><![CDATA[
    python '$__tool_directory__/sqlite_to_tabular.py'
    --sqlitedb='$sqlitedb' 
    --query_file='$query_file'
    @RESULT_HEADER@
    --output='$query_results'
    ]]></command>
    <configfiles>
        <configfile name="query_file">
$sqlquery

        <param name="sqlitedb" type="data" format="sqlite" label="SQLite Database"/>
        <param name="sqlquery" type="text" area="True" size="120x20" label="SQL query">
            <validator type="regex">(?ims)^\s*SELECT\s.*\sFROM\s.*$</validator>
            <sanitizer sanitize="False"/>
        </param>
        <expand macro="result_results_header_line" />
    </inputs>
    <outputs>
        <data name="query_results" format="tabular" />
    </outputs>
    <tests>