Mercurial > repos > iuc > sra_tools
comparison README.rst @ 18:7068f48d0ef9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit d22c001db39b52ebaa54837bebe2765c17b5c876"
author | iuc |
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date | Mon, 08 Jun 2020 05:49:21 -0400 |
parents | b723c120161a |
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17:c441583adae5 | 18:7068f48d0ef9 |
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1 The Galaxy tool wrappers contained in this tool shed repository rely on software developed by | 1 The Galaxy tool wrappers contained in this tool shed repository rely on software developed by |
2 the NCBI: http://github.com/ncbi/sra-tools. | 2 the NCBI: https://github.com/ncbi/sra-tools. |
3 | 3 |
4 NCBI Sequence Read Archive: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. | 4 NCBI Sequence Read Archive Toolkit: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software |
5 Use of SRA Toolkit software herein should comply with the GPL v2 or greater. | |
6 | |
7 Copyright (C) 2013 Matthew Shirley | |
8 | |
9 This program is free software: you can redistribute it and/or modify | |
10 it under the terms of the GNU General Public License as published by | |
11 the Free Software Foundation, either version 2 of the License, or | |
12 (at your option) any later version. | |
13 | |
14 This program is distributed in the hope that it will be useful, | |
15 but WITHOUT ANY WARRANTY; without even the implied warranty of | |
16 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
17 GNU General Public License for more details. | |
18 | |
19 You should have received a copy of the GNU General Public License | |
20 along with this program. If not, see <http://www.gnu.org/licenses/>. | |
21 | |
22 # INSTALLATION | |
23 | |
24 This software release was designed to install using the Galaxy toolshed under Linux and MacOS operating systems on Intel x86-compatible 32/64 bit architectures. | |
25 | |
26 *Build Requirements* | |
27 | |
28 - bash | |
29 - make | |
30 - gcc | |
31 - g++ | |
32 - libxml2 | |
33 | |
34 On a Debian OS use: | |
35 | |
36 apt-get install build-essential libxml2-dev | |
37 | |
38 On a Mac with [command line tools](https://developer.apple.com/downloads/index.action) installed: | |
39 | |
40 brew install libxml2 | |
41 | 5 |
42 # Installation of Aspera connect ascp binary | 6 # Installation of Aspera connect ascp binary |
43 | 7 |
44 The sra-tools suite is ready to benefit from increased transfer speed and reliability by using Aspera Connect ascp. | 8 The sra-tools suite is ready to benefit from increased transfer speed and reliability by using Aspera Connect ascp. |
45 To benefit, download the ascp commandline client, and place ascp and the required ssh keys into a PATH accessible to galaxys job handler. | 9 To benefit, download the ascp commandline client, and place ascp and the required ssh keys into a PATH accessible to galaxys job handler. |