Mercurial > repos > iuc > sra_tools
comparison sra_macros.xml @ 2:f256cb398262 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 4e83a7f6d542cd3129eb14a142f74c127f91d026
| author | iuc |
|---|---|
| date | Fri, 16 Sep 2016 17:24:03 -0400 |
| parents | 462ee06c9358 |
| children | 4732693f4661 |
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| 1:462ee06c9358 | 2:f256cb398262 |
|---|---|
| 1 <macros> | 1 <macros> |
| 2 <macro name="requirements"> | 2 <macro name="requirements"> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.2.3">ngs_sdk</requirement> | |
| 5 <requirement type="package" version="2.6.2">ncbi_vdb</requirement> | |
| 6 <requirement type="package" version="2.6.2">sra_toolkit</requirement> | |
| 7 <requirement type="package" version="2.6.2">sra-tools</requirement> | 4 <requirement type="package" version="2.6.2">sra-tools</requirement> |
| 8 <requirement type="package" version="5.18.1">perl</requirement> | |
| 9 </requirements> | 5 </requirements> |
| 10 </macro> | 6 </macro> |
| 11 <macro name="input_conditional"> | 7 <macro name="input_conditional"> |
| 12 <conditional name="input"> | 8 <conditional name="input"> |
| 13 <param name="input_select" type="select" label="select input type"> | 9 <param name="input_select" type="select" label="select input type"> |
| 21 <when value="file"> | 17 <when value="file"> |
| 22 <param format="sra" name="file" type="data" label="sra archive"/> | 18 <param format="sra" name="file" type="data" label="sra archive"/> |
| 23 </when> | 19 </when> |
| 24 <when value="file_list"> | 20 <when value="file_list"> |
| 25 <param format="txt" name="file_list" type="data" label="sra accession list"/> | 21 <param format="txt" name="file_list" type="data" label="sra accession list"/> |
| 26 </when> | 22 </when> |
| 27 </conditional> | 23 </conditional> |
| 28 </macro> | 24 </macro> |
| 29 <macro name="alignments"> | 25 <macro name="alignments"> |
| 30 <param name="alignments" type="select" value="both"> | 26 <param name="alignments" type="select" value="both"> |
| 31 <label>aligned or unaligned reads</label> | 27 <label>aligned or unaligned reads</label> |
| 50 <citation type="doi">10.1093/nar/gkq1019</citation> | 46 <citation type="doi">10.1093/nar/gkq1019</citation> |
| 51 </citations> | 47 </citations> |
| 52 </macro> | 48 </macro> |
| 53 <token name="@SRATOOLS_ATTRRIBUTION@"> | 49 <token name="@SRATOOLS_ATTRRIBUTION@"> |
| 54 Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. | 50 Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. |
| 55 | 51 |
| 56 Galaxy tool wrapper originally written by Matt Shirley (mdshw5 at gmail.com). | 52 Galaxy tool wrapper originally written by Matt Shirley (mdshw5 at gmail.com). |
| 57 | 53 |
| 58 Wrapper modified by Philip Mabon ( philip.mabon at phac-aspc.gc.ca ). | 54 Wrapper modified by Philip Mabon ( philip.mabon at phac-aspc.gc.ca ). |
| 59 | 55 |
| 60 Tool dependencies, clean-up and bug-fixes by Marius van den Beek (m.vandenbeek at gmail.com). | 56 Tool dependencies, clean-up and bug-fixes by Marius van den Beek (m.vandenbeek at gmail.com). |
| 61 | 57 |
| 62 For support and bug reports contact Matt Shirley or Marius van den Beek or go to https://github.com/galaxyproject/tools-iuc. | 58 For support and bug reports contact Matt Shirley or Marius van den Beek or go to https://github.com/galaxyproject/tools-iuc. |
| 63 | 59 |
| 64 </token> | 60 </token> |
| 65 </macros> | 61 </macros> |