Mercurial > repos > iuc > sra_tools
diff fasterq_dump.xml @ 19:248f85ff0733 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 1e2492fa4557ddc6ffefc16b249ed9ef0207d5e1"
| author | iuc |
|---|---|
| date | Tue, 23 Jun 2020 17:18:45 -0400 |
| parents | 7068f48d0ef9 |
| children | 964579f93c54 |
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--- a/fasterq_dump.xml Mon Jun 08 05:49:21 2020 -0400 +++ b/fasterq_dump.xml Tue Jun 23 17:18:45 2020 -0400 @@ -1,4 +1,4 @@ -<tool id="fasterq_dump" name="Faster Download and Extract Reads in FASTQ" version="@VERSION@+galaxy0" profile="18.01"> +<tool id="fasterq_dump" name="Faster Download and Extract Reads in FASTQ" version="@VERSION@+galaxy1" profile="18.01"> <description>format from NCBI SRA</description> <macros> <import>sra_macros.xml</import> @@ -169,6 +169,28 @@ <element name="SRR002702" file="SRR002702_2.fastq.gz" ftype="fastqsanger.gz" decompress="True"/> </output_collection> </test> + <test> + <param name="input_select" value="file_list"/> + <param name="file_list" value="sra_manifest.tabular" ftype="sra_manifest.tabular"/> + <output_collection name="list_paired" type="list:paired"> + <element name="SRR11857975"> + <element name="forward" file="SRR11857975_1.fastq.gz" decompress="True"> + </element> + <element name="reverse" file="SRR11857975_2.fastq.gz" decompress="True"> + </element> + </element> + </output_collection> + </test> + <test> + <param name="input_select" value="file_list"/> + <param name="file_list" value="sra_manifest.tabular" ftype="sra_manifest.tabular"/> + <output_collection name="list_paired" type="list:paired"> + <element name="SRR11953971"> + <element name="forward" file="SRR11953971_1.fastq.gz" decompress="True"/> + <element name="reverse" file="SRR11953971_2.fastq.gz" decompress="True"/> + </element> + </output_collection> + </test> </tests> <help><![CDATA[ **What it does?**