Mercurial > repos > iuc > sra_tools

diff test-data/sra_manifest.tabular @ 19:248f85ff0733 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 1e2492fa4557ddc6ffefc16b249ed9ef0207d5e1"
author iuc
date Tue, 23 Jun 2020 17:18:45 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sra_manifest.tabular	Tue Jun 23 17:18:45 2020 -0400
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+Run	Assay Type	BioProject	BioSample	Center Name	Consent	DATASTORE filetype	DATASTORE provider	DATASTORE region	Experiment	Instrument	LibraryLayout	LibrarySelection	LibrarySource	Organism	Platform	Sample Name	SRA Study	Bytes	ReleaseDate	Library Name	Collection_Date	isolate	AvgSpotLen	Bases	BioSampleModel	Host	geo_loc_name_country	geo_loc_name_country_continent	geo_loc_name	host_disease	collected_by	isolation_source	lat_lon	host_sex	passage_history	strain	host_age	host_subject_id	ENA-FIRST-PUBLIC (run)	ENA-FIRST-PUBLIC	ENA-LAST-UPDATE (run)	ENA-LAST-UPDATE	geographic_location_(country_and/or_sea)	host_health_state	collecting_institution	collector_name	geographic_location_(region_and_locality)	host_common_name	host_scientific_name	gisaid_id	isolation_source_host-associated	sample_capture_status	isolate (run)	ARTIC_barcode_identifiers	host_tissue_sampled	library_id	AssemblyName	GEO_Accession (exp)	source_name	tissue	barcode_identifiers	Cell_type	host_description	sample_type	age_event	Age	Biomaterial_provider	cell_number	cell_processing_protocol	cell_quality	disease	disease_stage	ETHNICITY	health_state	sex	single_cell	synthetic	tissue_processing	cell_subsets	patient_group	disease_state	subject_status	tissue/cell_type	sample_origin	organ	host_disease_stage	stock_production_date	culture_collection	COUNTRY	Extraction-method	host_disease_outcome	identification_method	Laboratory_Host	link_addit_analys	ref_biomaterial	datatype (run)
+SRR11953971	RNA-Seq	PRJNA622837	SAMN14938999	BROAD INSTITUTE OF HARVARD AND MIT	public	bam,sra	gs,ncbi,s3	gs.US,ncbi.public,s3.us-east-1	SRX8498148	Illumina NovaSeq 6000	PAIRED	cDNA	VIRAL RNA	Severe acute respiratory syndrome coronavirus 2	ILLUMINA	MA_MGH_00524	SRP266465	207470	2020-06-08T00:00:00Z	SAMN14938999_ERCC-00040_RandomHexamer_NexteraXT	2020-03-17	not applicable	202	415514	Pathogen.cl	Homo sapiens	USA	North America	USA: Massachusetts	COVID-19	Massachusetts General Hospital	nasopharyngeal swab	missing		not applicable	not applicable		MA_MGH_00524