Mercurial > repos > iuc > sra_tools

diff fasterq_dump.xml @ 31:734abc7ac21d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 3a7f854e8ebfb2bed11198fb83181f305af633f7
author iuc
date Thu, 14 Sep 2023 07:38:02 +0000
parents 4317d3cb6cba
children 1ec814014652
line wrap: on
line diff
--- a/fasterq_dump.xml	Mon Sep 11 08:37:23 2023 +0000
+++ b/fasterq_dump.xml	Thu Sep 14 07:38:02 2023 +0000
@@ -187,6 +187,30 @@
                 </element>
             </output_collection>
         </test>
+        <test expect_num_outputs="4">
+            <param name="input_select" value="file_list"/>
+            <param name="file_list" value="sra_manifest.tabular" ftype="sra_manifest.tabular"/>
+            <section name="adv">
+                <param name="seq_defline" value="@$ac.$si/$ri $sn length=$rl"/>
+            </section>
+            <output_collection name="list_paired" type="list:paired" count="1">
+                <element name="SRR11953971">
+                    <element name="forward" ftype="fastqsanger.gz" decompress="True">
+                        <assert_contents>
+                            <!-- TODO replace has_size by has_line -->
+                            <has_size min="56206"/>
+                            <!-- <has_line line="@SRR11953971.2053/1 2053 length=101"/> -->
+                        </assert_contents>
+                    </element>
+                    <element name="reverse" ftype="fastqsanger.gz" decompress="True">
+                        <assert_contents>
+                            <has_size min="59843"/>
+                            <!-- <has_line line="@SRR11953971.2053/2 2053 length=101"/> -->
+                        </assert_contents>
+                    </element>
+                </element>
+            </output_collection>
+        </test>
     </tests>
     <help><![CDATA[
 **What it does?**