diff fastq_dump.xml @ 31:734abc7ac21d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 3a7f854e8ebfb2bed11198fb83181f305af633f7

--- a/fastq_dump.xml	Mon Sep 11 08:37:23 2023 +0000
+++ b/fastq_dump.xml	Thu Sep 14 07:38:02 2023 +0000
@@ -226,6 +226,49 @@
                 </element>
             </output_collection>
         </test>
+        <test expect_num_outputs="2">
+            <param name="input_select" value="accession_number"/>
+            <param name="outputformat" value="fastqsanger.gz"/>
+            <param name="accession" value="ERR086330, SRR11953971"/>
+            <section name="adv">
+                <param name="defline_seq" value="@$ac.$si/$ri $sn length=$rl"/>
+            </section>
+            <output_collection name="list_paired" type="list:paired" count="2">
+                <element name="ERR086330">
+                    <element name="forward" ftype="fastqsanger.gz" decompress="True">
+                        <assert_contents>
+                            <!-- decompressed content assertions only work from 23.1
+                                 therefore we test for size being at least one byte
+                                 larger than the results of the previous test which
+                                 uses the shorter default deflines
+                                 TODO replace has_size by has_line-->
+                            <has_size min="147"/>
+                            <!-- <has_line line="@ERR086330.1/1 1 length=76"/> -->
+                        </assert_contents>
+                    </element>
+                    <element name="reverse" ftype="fastqsanger.gz" decompress="True">
+                        <assert_contents>
+                            <has_size min="141"/>
+                            <!-- <has_line line="@ERR086330.1/2 1 length=76"/> -->
+                        </assert_contents>
+                    </element>
+                </element>
+                <element name="SRR11953971">
+                    <element name="forward" ftype="fastqsanger.gz" decompress="True">
+                        <assert_contents>
+                            <has_size min="56206"/>
+                            <!-- <has_line line="@SRR11953971.1/1 1 length=101"/> -->
+                        </assert_contents>
+                    </element>
+                    <element name="reverse" ftype="fastqsanger.gz" decompress="True">
+                        <assert_contents>
+                            <has_size min="59843"/>
+                            <!-- <has_line line="@SRR11953971.1/2 1 length=101"/> -->
+                        </assert_contents>
+                    </element>
+                </element>
+            </output_collection>
+        </test>
     </tests>
     <help><![CDATA[
 **What it does?**