Mercurial > repos > iuc > sra_tools

diff fasterq_dump.xml @ 16:aad3885b3216 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 2be63abd7e4db27fa32ecbbc10d48cacb0073115"
author iuc
date Fri, 20 Mar 2020 12:47:18 -0400
parents f5ea3ce9b9b0
children c441583adae5
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line diff
--- a/fasterq_dump.xml	Tue Sep 10 11:35:35 2019 -0400
+++ b/fasterq_dump.xml	Fri Mar 20 12:47:18 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="fasterq_dump" name="Faster Download and Extract Reads in FASTQ" version="@VERSION@.4" profile="16.01">
+<tool id="fasterq_dump" name="Faster Download and Extract Reads in FASTQ" version="@VERSION@+galaxy1" profile="18.01">
     <description>format from NCBI SRA</description>
     <macros>
         <import>sra_macros.xml</import>
@@ -6,13 +6,12 @@
     <expand macro="requirements"/>
     <version_command>fasterq-dump --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
-
     @SET_ACCESSIONS@
     #if $input.input_select == "file":
         acc='${input.file.name}' &&
         ln -s '${input.file}' "\$acc" &&
     #end if
-
+    @CONFIGURE_TIMEOUT@
     fasterq-dump "\$acc" -e \${GALAXY_SLOTS:-1}
     $adv.split
     #if str( $adv.minlen ) != "":