Mercurial > repos > iuc > sra_tools
diff fastq_dump.xml @ 40:8848455c0270 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 7632986831e24fcd189a57d824b9e6b1d5dc5c4c
| author | iuc |
|---|---|
| date | Mon, 26 Aug 2024 14:59:28 +0000 |
| parents | fb723c531be5 |
| children |
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--- a/fastq_dump.xml Mon Jun 03 15:07:36 2024 +0000 +++ b/fastq_dump.xml Mon Aug 26 14:59:28 2024 +0000 @@ -91,7 +91,7 @@ <option value="fastqsanger.bz2">bzip2 compressed fastq</option> </param> <section name="adv" title="Advanced Options" expanded="False"> - <expand macro="defline" defline_param="--defline-seq" defline_default="@$sn[_$rn]/$ri"/> + <expand macro="defline" defline_param="--defline-seq" defline_default="@$ac.$sn[_$rn]/$ri"/> <param name="minID" type="integer" label="Minimum spot ID" optional="true" help="Minimum spot id to be dumped." argument="--minSpotId"/> <param name="maxID" type="integer" label="Maximum spot ID" optional="true" help="Maximum spot id to be dumped." argument="--maxSpotId"/> <param name="minlen" type="integer" label="Minimum read length" optional="true" help="Filter by sequence length. Will dump only reads longer or equal to this value." argument="--minReadLen"/> @@ -279,8 +279,8 @@ </section> <output_collection name="list_paired" type="list:paired" count="1"> <element name="SRR522874.sra"> - <element name="forward" file="SRR522874.sra_2.fastq.gz" ftype="fastqsanger.gz" decompress="True"/> - <element name="reverse" file="SRR522874.sra_4.fastq.gz" ftype="fastqsanger.gz" decompress="True"/> + <element name="forward" file="SRR522874.sra_2_1.fastq.gz" ftype="fastqsanger.gz" decompress="True"/> + <element name="reverse" file="SRR522874.sra_4_1.fastq.gz" ftype="fastqsanger.gz" decompress="True"/> </element> </output_collection> </test>