# HG changeset patch
# User iuc
# Date 1594079186 14400
# Node ID 494b2ec081626626e78db2a2fc1cb5cf87dbef03
# Parent  964579f93c54d5a6ad61920a53c6a2e75a5b6ec1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 1e2492fa4557ddc6ffefc16b249ed9ef0207d5e1"

diff -r 964579f93c54 -r 494b2ec08162 fasterq_dump.xml
--- a/fasterq_dump.xml	Wed Jul 01 17:48:02 2020 -0400
+++ b/fasterq_dump.xml	Mon Jul 06 19:46:26 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="fasterq_dump" name="Faster Download and Extract Reads in FASTQ" version="@VERSION@+galaxy2" profile="18.01">
+<tool id="fasterq_dump" name="Faster Download and Extract Reads in FASTQ" version="@VERSION@+galaxy1" profile="18.01">
     <description>format from NCBI SRA</description>
     <macros>
         <import>sra_macros.xml</import>
diff -r 964579f93c54 -r 494b2ec08162 fastq_dump.xml
--- a/fastq_dump.xml	Wed Jul 01 17:48:02 2020 -0400
+++ b/fastq_dump.xml	Mon Jul 06 19:46:26 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="fastq_dump" name="Download and Extract Reads in FASTA/Q" version="@VERSION@+galaxy2" profile="18.01">
+<tool id="fastq_dump" name="Download and Extract Reads in FASTA/Q" version="@VERSION@+galaxy1" profile="18.01">
     <description>format from NCBI SRA</description>
     <macros>
         <import>sra_macros.xml</import>
diff -r 964579f93c54 -r 494b2ec08162 sam_dump.xml
--- a/sam_dump.xml	Wed Jul 01 17:48:02 2020 -0400
+++ b/sam_dump.xml	Mon Jul 06 19:46:26 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="sam_dump" name="Download and Extract Reads in BAM" version="@VERSION@+galaxy2" profile="18.01">
+<tool id="sam_dump" name="Download and Extract Reads in BAM" version="@VERSION@+galaxy1" profile="18.01">
     <description>format from NCBI SRA</description>
     <macros>
         <import>sra_macros.xml</import>
diff -r 964579f93c54 -r 494b2ec08162 sra_macros.xml
--- a/sra_macros.xml	Wed Jul 01 17:48:02 2020 -0400
+++ b/sra_macros.xml	Mon Jul 06 19:46:26 2020 -0400
@@ -23,7 +23,7 @@
                 #set $column = $input.file_list.unsanitized.metadata.column_names.index('Run') + 1
                 cut -f $column '$input.file_list'| tail -n +2 > "manifest" &&
             #else
-                ln -s '$input.file_list' manifest &&
+                ln -s '$input.file_list' > manifest &&
             #end if
             for acc in `@ACCESSIONS_FROM_FILE@ manifest` ;
             do (