Mercurial > repos > iuc > stacks2_clonefilter

diff test-data/procrad/process_radtags_paired.out @ 0:1b6d07160736 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author iuc
date Mon, 01 Jul 2019 10:57:08 -0400
parents
children 42201b90e3f4
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/procrad/process_radtags_paired.out	Mon Jul 01 10:57:08 2019 -0400
@@ -0,0 +1,55 @@
+process_radtags v2.2, executed 2018-11-23 13:35:34
+process_radtags -p stacks_inputs/ --paired -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_91.dat --len_limit 50 -D -y gzfasta --inline_null -e ecoRI -o stacks_outputs
+File	Retained Reads	Low Quality	Barcode Not Found	RAD cutsite Not Found	Total
+reads_R1_0.fastq	9222	0	0	4778	14000
+
+Total Sequences	14000
+Barcode Not Found	0
+Low Quality	0
+RAD Cutsite Not Found	4778
+Retained Reads	9222
+
+Barcode	Filename	Total	NoRadTag	LowQuality	Retained
+ATGGGG	PopA_01	320	94	0	226
+GGGTAA	PopA_02	292	86	0	206
+AGGAAA	PopA_03	448	132	0	316
+TTTAAG	PopA_04	336	146	0	190
+GGTGTG	PopA_05	440	154	0	286
+TGATGT	PopA_06	428	147	0	281
+GGTTGT	PopA_07	364	137	0	227
+ATAAGT	PopA_08	464	164	0	300
+AAGATA	PopA_09	364	134	0	230
+TGTGAG	PopA_10	336	128	0	208
+ATAGTT	PopA_11	400	132	0	268
+GGAAGG	PopA_12	356	136	0	220
+TTTGTG	PopA_13	380	152	0	228
+TTAAAT	PopA_14	332	96	0	236
+AATAAG	PopA_15	304	74	0	230
+AAGAGG	PopA_16	348	112	0	236
+TAGTGT	PopA_17	484	146	0	338
+TGGAAG	PopA_18	296	98	0	198
+GGGTTG	PopA_19	220	64	0	156
+CATCAT	PopA_20	356	144	0	212
+GGAGAG	PopB_20	420	142	0	278
+GTTTTA	PopB_01	272	90	0	182
+TGATAA	PopB_02	332	108	0	224
+GTTGAT	PopB_03	296	74	0	222
+AGATTA	PopB_04	360	156	0	204
+GTATAG	PopB_05	272	106	0	166
+TTGGGA	PopB_06	332	112	0	220
+ATATAT	PopB_07	484	156	0	328
+GATGAG	PopB_08	416	152	0	264
+GGGAAT	PopB_09	396	126	0	270
+AGTAAT	PopB_10	328	120	0	208
+GGGATA	PopB_11	292	90	0	202
+GAGAAG	PopB_12	324	110	0	214
+AGTAGA	PopB_13	408	146	0	262
+AAGGAT	PopB_14	360	128	0	232
+AGGGTA	PopB_15	268	72	0	196
+TGTTTT	PopB_16	276	98	0	178
+ATGATG	PopB_17	284	100	0	184
+GAGTTA	PopB_18	320	112	0	208
+ATGTAG	PopB_19	292	104	0	188
+
+Sequences not recorded
+Barcode	Total