diff test-data/kmerfilter/kfreqdist.tsv @ 2:2f1d464ebfd2 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"

--- a/test-data/kmerfilter/kfreqdist.tsv	Mon Sep 30 14:19:47 2019 -0400
+++ b/test-data/kmerfilter/kfreqdist.tsv	Thu Jul 16 07:30:45 2020 -0400
@@ -1,3 +1,545 @@
-# KmerFrequency	Count
-1	408
-2	136
+#	Kmer	Count
+TAAGAGCATCGAGGG	1
+CTCAGTTAAGAGCAT	1
+ACTCAGTTAAGAGCA	1
+CCACTCAGTTAAGAG	1
+GCCACTCAGTTAAGA	1
+GGCCACTCAGTTAAG	1
+GGGCCACTCAGTTAA	1
+CCGCGGGCCACTCAG	1
+CCCGCGGGCCACTCA	1
+CCCCGCGGGCCACTC	1
+TTCGGACCCCGCGGG	1
+GCTTCGGACCCCGCG	1
+CGCTTCGGACCCCGC	1
+AACGCTTCGGACCCC	1
+GTAAACGCTTCGGAC	1
+AGTAAACGCTTCGGA	1
+AAGTAAACGCTTCGG	1
+AAAGTAAACGCTTCG	1
+CAAAGTAAACGCTTC	1
+TCAAAGTAAACGCTT	1
+TTTTCAAAGTAAACG	1
+TTTTTTCAAAGTAAA	1
+ATTTTTTCAAAGTAA	1
+CTAATTTTTTCAAAG	1
+CACTCTAATTTTTTC	1
+AACACTCTAATTTTT	1
+GAACACTCTAATTTT	1
+CTTTGAACACTCTAA	1
+GCTTTGAACACTCTA	1
+TGCTTTGAACACTCT	1
+CTGCTTTGAACACTC	1
+TAAACGCTTCGGACC	1
+CCTGCTTTGAACACT	1
+GCCTGCTTTGAACAC	1
+GGGCCTGCTTTGAAC	1
+ACCGGGCCTGCTTTG	1
+GACCGGGCCTGCTTT	1
+ATTCAGGCGACCGGG	1
+TATTCAGGCGACCGG	1
+GTATTCAGGCGACCG	1
+CGGTATTCAGGCGAC	1
+ACACTCTAATTTTTT	1
+GCGGTATTCAGGCGA	1
+TGCGGTATTCAGGCG	1
+CTGCGGTATTCAGGC	1
+TAGCTGCGGTATTCA	1
+CTAGCTGCGGTATTC	1
+CCTAGCTGCGGTATT	1
+TCCTAGCTGCGGTAT	1
+TTCCTAGCTGCGGTA	1
+CATTATTCCTAGCTG	1
+CCATTATTCCTAGCT	1
+ATTCCATTATTCCTA	1
+TCCTATTCCATTATT	1
+GTCCTATTCCATTAT	1
+GAGTCCTATTCCATT	1
+GGAGTCCTATTCCAT	1
+AACCGGAGTCCTATT	1
+GGACCCCGCGGGCCA	1
+GAACCGGAGTCCTAT	1
+AATAGAACCGGAGTC	1
+AAATAGAACCGGAGT	1
+AAAATAGAACCGGAG	1
+ACAAAATAGAACCGG	1
+CCACAAAATAGAACC	1
+ACCCACAAAATAGAA	1
+AACCCACAAAATAGA	1
+AAACCCACAAAATAG	1
+AAAACCCACAAAATA	1
+AAAAACCCACAAAAT	1
+GAAAAACCCACAAAA	1
+TTAAGAGCATCGAGG	1
+AGAAAAACCCACAAA	1
+AAGAAAAACCCACAA	1
+TGTTATAGCAGCAAA	1
+GTACTCTGACCCTGG	2
+GGTCGACATACTTTT	1
+AGCAAAGGGGGGACC	1
+TAGAACCGGAGTCCT	1
+AGGCTGTTATAGCAG	1
+AGAACCGGAGTCCTA	1
+GAGGCTGTTATAGCA	1
+GGAGGCTGTTATAGC	1
+AGAAGAGTGGAGGCT	1
+CCAGAAGAGTGGAGG	1
+TTCCTCTGTCCCATT	2
+CCTTCCCAGAAGAGT	1
+GCAGCAAAGGGGGGA	1
+TTTTCGACCGAAACT	2
+TCTAACATCTAGTGG	1
+AGTGGAGGCTGTTAT	1
+AGTTGACACACACAA	2
+TCTAGTGGAAAGCCT	1
+CTGATTGAAACGCTA	1
+CAGTTAAGAGCATCG	1
+ACGCTATTAGCGCGC	1
+TTGACACACACAACA	2
+GAACCACTACTTCAA	1
+CACTCAGTTAAGAGC	1
+CTAACATCTAGTGGA	1
+GCTGCGGTATTCAGG	1
+GAGATGTTTGACGAG	1
+CGGAGTCCTATTCCA	1
+ACCGAAACTACACAT	2
+GAAGAGTGGAGGCTG	1
+AAGCCTTCCCAGAAG	1
+AACCTCCGATCCGCA	2
+TGAGCAACCCTACAG	2
+ACGTTCTAACATCTA	1
+AACGTTCTAACATCT	1
+TATTCCTAGCTGCGG	1
+ATTATTCCTAGCTGC	1
+ATGTTTGACGAGCAG	1
+TCTCTCGCACCGGAA	2
+ATGAGATGTTTGACG	1
+GGCCTGCTTTGAACA	1
+AGCCTTCCCAGAAGA	1
+TTCCATTATTCCTAG	1
+CAACGTTCTAACATC	1
+ACTGATTGAAACGCT	1
+CTAGTGGAAAGCCTT	1
+TGAGATGTTTGACGA	1
+TCTGTCCCATTTCCT	2
+CCTCTGTCCCATTTC	2
+CATTCCTCTGTCCCA	2
+TTGAACACTCTAATT	1
+GAATGAGATGTTTGA	1
+ACACATTCCTCTGTC	2
+ATTCCTAGCTGCGGT	1
+CTCCATATTATTGCC	1
+GACCGAAACTACACA	2
+CGACCGAAACTACAC	2
+ACTACACATTCCTCT	2
+CTGCAGTACTCTGAC	2
+TTCTAACATCTAGTG	1
+CCGAAACTACACATT	2
+ATCCGTTACATATGT	1
+TACATATGTATGTAT	1
+CAGTACTCTGACCCT	2
+GTTCTAACATCTAGT	1
+ACAGTTTTCGACCGA	2
+TTGACGAGCAGGGGT	1
+CTCTGTCCCATTTCC	2
+CACAAAATAGAACCG	1
+TACTCTGACCCTGGC	2
+ATAGCAGCAAAGGGG	1
+TGAATGAGATGTTTG	1
+AACAGTTTTCGACCG	2
+TCGGACCCCGCGGGC	1
+ACCCTACAGTTGACA	2
+TCTCTCTCGCACCGG	2
+GTATGTATGTACACA	1
+ACACAACAGTTTTCG	2
+ACACACAACAGTTTT	2
+TCCCAGAAGAGTGGA	1
+ACCACCGCTAACTAG	1
+GAGTGGAGGCTGTTA	1
+ACACACACAACAGTT	2
+AACGCTATTAGCGCG	1
+GTAACTGATTGAAAC	1
+GTCTCTCTCGCACCG	2
+AACATCTAGTGGAAA	1
+CTTCCCAGAAGAGTG	1
+GTGGAAAGCCTTCCC	1
+CTACTTCAACTCAAG	1
+CGCGGGCCACTCAGT	1
+AACCTGTCTCTCTCG	2
+CTCGCACCGGAAACC	2
+CGCACCGGAAACCTC	2
+TATGTATGTACACAC	1
+ATCCATTTCACATCC	1
+ACTCTAATTTTTTCA	1
+GCTGCAGTACTCTGA	2
+ACATGAGCAACCCTA	2
+GACCCCGCGGGCCAC	1
+AAGAGTGGAGGCTGT	1
+CCGGAAACCTCCGAT	2
+GCAGCAACGTTCTAA	1
+GAAACTACACATTCC	2
+CTGACCCTGGCCACC	2
+ACCTCAACCTGTCTC	2
+AAACTACACATTCCT	2
+AGAGTGGAGGCTGTT	1
+GCGACCGGGCCTGCT	1
+CATCTAGTGGAAAGC	1
+CAGAAACATGAGCAA	2
+ACTTCAACTCAAGGT	1
+CGGGCCACTCAGTTA	1
+AGAAACATGAGCAAC	2
+CTATTCCATTATTCC	1
+TTTTGAATGAGATGT	1
+GGCGACCGGGCCTGC	1
+ACATCTAGTGGAAAG	1
+TAGCAGCAAAGGGGG	1
+GGACCAACTCCATAT	1
+GACATTGGCTGCAGT	2
+CCTATTCCATTATTC	1
+CAGTTTTCGACCGAA	2
+CAACCCTACAGTTGA	2
+TTTGACGAGCAGGGG	1
+GACGTAACTGATTGA	1
+CAGGCGACCGGGCCT	1
+ACTCTGACCCTGGCC	2
+CCGGGCCTGCTTTGA	1
+AGTGGAAAGCCTTCC	1
+TTGAAACGCTATTAG	1
+CGTTCTAACATCTAG	1
+TTGAGGATGCAGCAA	1
+CTCAAAGCGAGTGAC	1
+GGACATTGGCTGCAG	2
+ACCTGTCTCTCTCGC	2
+TTTGAACACTCTAAT	1
+TGACACACACAACAG	2
+CACATTCCTCTGTCC	2
+GTTTTCGACCGAAAC	2
+GCAGAAACATGAGCA	2
+CTGGCCACCTCAACC	2
+GATCCGCAGAAACAT	2
+TCCGATCCGCAGAAA	2
+AACCACTACTTCAAC	1
+GCTGTTATAGCAGCA	1
+AACTAGCTATCCATT	1
+CATGAGCAACCCTAC	2
+TCGACCGAAACTACA	2
+CCTACAGTTGACACA	2
+AAGGGGAACCACTAC	1
+AAAGCCTTCCCAGAA	1
+CACAACAGTTTTCGA	2
+GGAACCACTACTTCA	1
+CCTCAACCTGTCTCT	2
+AAACCTCCGATCCGC	2
+CTTCGGACCCCGCGG	1
+GGGGAACCACTACTT	1
+GGCTGCAGTACTCTG	2
+TTGGCTGCAGTACTC	2
+GAGCAAGGGGAACCA	1
+AGCAACGTTCTAACA	1
+TGCAGTACTCTGACC	2
+TGGCCACCTCAACCT	2
+GACTTTTGAATGAGA	1
+CAGAAGAAAAACCCA	1
+CACCTCAACCTGTCT	2
+CCGATCCGCAGAAAC	2
+GTTATAGCAGCAAAG	1
+TGGCTGCAGTACTCT	2
+CTGTCCCATTTCCTC	2
+AGATGTTTGACGAGC	1
+TACTTCAACTCAAGG	1
+AGCAGGGGTCGACAT	1
+CTTTTGAATGAGATG	1
+TCAACTCAAGGTCTC	1
+ACCGCTAACTAGCTA	1
+GCCACCTCAACCTGT	2
+TGACTTTTGAATGAG	1
+ACCACTACTTCAACT	1
+CCACCTCAACCTGTC	2
+CCATATTATTGCCCA	1
+CATTGGCTGCAGTAC	2
+CTCTAATTTTTTCAA	1
+ATCTAGTGGAAAGCC	1
+AGTACTCTGACCCTG	2
+TTCGACCGAAACTAC	2
+CGGAAACCTCCGATC	2
+AGCTATCCATTTCAC	1
+TGACCCTGGCCACCT	2
+CCGCGGCCCTTGCAG	1
+CTTCAACTCAAGGTC	1
+TTAGCGCGCACCACC	1
+GTGGAGGCTGTTATA	1
+CACCGGAAACCTCCG	2
+GATTGAGGATGCAGC	1
+AAACGCTTCGGACCC	1
+ACAGTTGACACACAC	2
+CGACCGGGCCTGCTT	1
+AGTCCTATTCCATTA	1
+AAGGTCTCAAAGCGA	1
+ACCCTGGCCACCTCA	2
+ACAACAGTTTTCGAC	2
+CTCTCTCGCACCGGA	2
+TGTCTCTCTCGCACC	2
+CAAAGCGAGTGACGT	1
+TTTTTCAAAGTAAAC	1
+TCTCGCACCGGAAAC	2
+GGCCACCTCAACCTG	2
+ATGCCGCGGCCCTTG	1
+TGTTTGACGAGCAGG	1
+CCCACAAAATAGAAC	1
+GAGGATGCAGCAACG	1
+AACCCTACAGTTGAC	2
+CCTGTCTCTCTCGCA	2
+TGCAGCAACGTTCTA	1
+AGCAAGGGGAACCAC	1
+TCTGACCCTGGCCAC	2
+GGCCCTTGCAGAGCA	1
+TAATTTTTTCAAAGT	1
+CTGTCTCTCTCGCAC	2
+ATAGAACCGGAGTCC	1
+GACCCTGGCCACCTC	2
+TGATTGAAACGCTAT	1
+GCGGGCCACTCAGTT	1
+TCAGAAGAAAAACCC	1
+TGGAGGCTGTTATAG	1
+AGCGCGCACCACCGC	1
+TCGCACCGGAAACCT	2
+TCAGTTAAGAGCATC	1
+ATTCCTCTGTCCCAT	2
+GACGAGCAGGGGTCG	1
+CCACTACTTCAACTC	1
+TCAACCTGTCTCTCT	2
+ACCGGAAACCTCCGA	2
+CCCTGGCCACCTCAA	2
+GAAACATGAGCAACC	2
+GCTAACTAGCTATCC	1
+AGTTTTCGACCGAAA	2
+CACACACAACAGTTT	2
+ATTTCACATCCGTTA	1
+TATTCCATTATTCCT	1
+CGATCCGCAGAAACA	2
+GGCTGTTATAGCAGC	1
+GGAAACCTCCGATCC	2
+GCAACGTTCTAACAT	1
+AGCAACCCTACAGTT	2
+TTATTCCTAGCTGCG	1
+CTCTGACCCTGGCCA	2
+CAGCAAAGGGGGGAC	1
+CAGAAGAGTGGAGGC	1
+TACAGTTGACACACA	2
+TAGCGCGCACCACCG	1
+AAACATGAGCAACCC	2
+AAACGCTATTAGCGC	1
+GAAACCTCCGATCCG	2
+GCCCATGACTTTTGA	1
+TCCATATTATTGCCC	1
+ACATTGGCTGCAGTA	2
+CAGTTGACACACACA	2
+TCAAGGTCTCAAAGC	1
+ATCCGCAGAAACATG	2
+CACACAACAGTTTTC	2
+GGATGCAGCAACGTT	1
+TTCAAAGTAAACGCT	1
+AACATGAGCAACCCT	2
+GAGTGACGTAACTGA	1
+CTGTTATAGCAGCAA	1
+TAACATCTAGTGGAA	1
+CTCTCGCACCGGAAA	2
+CGCAGAAACATGAGC	2
+GGATTGAGGATGCAG	1
+TCCTCTGTCCCATTT	2
+GGTATTCAGGCGACC	1
+ATGAGCAACCCTACA	2
+TGGAAAGCCTTCCCA	1
+AGGCGACCGGGCCTG	1
+ACCTCCGATCCGCAG	2
+TCCATTATTCCTAGC	1
+ACTACTTCAACTCAA	1
+GAGCAACCCTACAGT	2
+GCAACCCTACAGTTG	2
+AGCTGCGGTATTCAG	1
+ACTAGCTATCCATTT	1
+AGAAGAAAAACCCAC	1
+CCCTACAGTTGACAC	2
+CTACAGTTGACACAC	2
+CAAGGGGAACCACTA	1
+AGGATGCAGCAACGT	1
+TTATAGCAGCAAAGG	1
+GTTAAGAGCATCGAG	1
+TATAGCAGCAAAGGG	1
+GCAAAGGGGGGACCA	1
+CAAAGGGGGGACCAA	1
+ACCCCGCGGGCCACT	1
+GACCAACTCCATATT	1
+ACATATGTATGTATG	1
+AAGGGGGGACCAACT	1
+ACATTCCTCTGTCCC	2
+GCACCACCGCTAACT	1
+CCGCAGAAACATGAG	2
+AGGGGGGACCAACTC	1
+GGGGGGACCAACTCC	1
+GGGGGACCAACTCCA	1
+GCACCGGAAACCTCC	2
+GGGGACCAACTCCAT	1
+GCAGTACTCTGACCC	2
+ACCAACTCCATATTA	1
+CCAACTCCATATTAT	1
+ACATCCGTTACATAT	1
+TATTGCCCATGACTT	1
+CAACTCCATATTATT	1
+CTCAAGGTCTCAAAG	1
+CTATTAGCGCGCACC	1
+AACTCCATATTATTG	1
+ATTGAGGATGCAGCA	1
+CATATTATTGCCCAT	1
+GGGAACCACTACTTC	1
+ATATTATTGCCCATG	1
+TATTATTGCCCATGA	1
+TCTAATTTTTTCAAA	1
+TTTCGACCGAAACTA	2
+ATTATTGCCCATGAC	1
+ACTCCATATTATTGC	1
+CCGCTAACTAGCTAT	1
+TTATTGCCCATGACT	1
+CAACAGTTTTCGACC	2
+ATTGCCCATGACTTT	1
+TTGCCCATGACTTTT	1
+TGAGGATGCAGCAAC	1
+TGCCCATGACTTTTG	1
+CGCACCACCGCTAAC	1
+CCCATGACTTTTGAA	1
+TTCACATCCGTTACA	1
+CCATGACTTTTGAAT	1
+ATGACTTTTGAATGA	1
+ATGCAGCAACGTTCT	1
+GCGCACCACCGCTAA	1
+ACTTTTGAATGAGAT	1
+CATGACTTTTGAATG	1
+TTTGAATGAGATGTT	1
+AATTTTTTCAAAGTA	1
+ATGTATGTACACACA	1
+TCCGCAGAAACATGA	2
+TTGAATGAGATGTTT	1
+GATGTTTGACGAGCA	1
+TCACATCCGTTACAT	1
+ACGAGCAGGGGTCGA	1
+GAAGAAAAACCCACA	1
+CCCAGAAGAGTGGAG	1
+CGAGCAGGGGTCGAC	1
+GAGCAGGGGTCGACA	1
+GCAGAGCAAGGGGAA	1
+GTTGACACACACAAC	2
+GCAGGGGTCGACATA	1
+CGGACCCCGCGGGCC	1
+GATTGAAACGCTATT	1
+CAGGGGTCGACATAC	1
+ATTGAAACGCTATTA	1
+CAGCAACGTTCTAAC	1
+CAGAGCAAGGGGAAC	1
+AATGAGATGTTTGAC	1
+AGGGGTCGACATACT	1
+CTCCGATCCGCAGAA	2
+GGGGTCGACATACTT	1
+CAACCTGTCTCTCTC	2
+GGGTCGACATACTTT	1
+CAAAATAGAACCGGA	1
+TACACATTCCTCTGT	2
+AACTCAAGGTCTCAA	1
+TGCCGCGGCCCTTGC	1
+GCCGCGGCCCTTGCA	1
+CGCGGCCCTTGCAGA	1
+GCGGCCCTTGCAGAG	1
+CGGCCCTTGCAGAGC	1
+TTTCAAAGTAAACGC	1
+GCCTTCCCAGAAGAG	1
+TTTCACATCCGTTAC	1
+CCCTTGCAGAGCAAG	1
+CGGGCCTGCTTTGAA	1
+CTTGCAGAGCAAGGG	1
+TTGCAGAGCAAGGGG	1
+AAAGGGGGGACCAAC	1
+CCTTGCAGAGCAAGG	1
+TGCAGAGCAAGGGGA	1
+AGAGCAAGGGGAACC	1
+CCGGAGTCCTATTCC	1
+GCAAGGGGAACCACT	1
+TCCGTTACATATGTA	1
+AGGGGAACCACTACT	1
+CCTCCGATCCGCAGA	2
+CCTGGCCACCTCAAC	2
+CACTACTTCAACTCA	1
+TTCCCAGAAGAGTGG	1
+TTCAACTCAAGGTCT	1
+CAACTCAAGGTCTCA	1
+ACTCAAGGTCTCAAA	1
+GGTCTCAAAGCGAGT	1
+ACGCTTCGGACCCCG	1
+ATTGGCTGCAGTACT	2
+CAAGGTCTCAAAGCG	1
+GCTATCCATTTCACA	1
+GGGACCAACTCCATA	1
+TATCCATTTCACATC	1
+AACTACACATTCCTC	2
+AGGTCTCAAAGCGAG	1
+GATGCAGCAACGTTC	1
+GTCTCAAAGCGAGTG	1
+TGAACACTCTAATTT	1
+TGTATGTATGTACAC	1
+TCTCAAAGCGAGTGA	1
+TCAAAGCGAGTGACG	1
+AAGCGAGTGACGTAA	1
+CACCGCTAACTAGCT	1
+AGCGAGTGACGTAAC	1
+TTCAGGCGACCGGGC	1
+CACCACCGCTAACTA	1
+GCGAGTGACGTAACT	1
+AGTGACGTAACTGAT	1
+GTGACGTAACTGATT	1
+TATGTATGTATGTAC	1
+TGACGTAACTGATTG	1
+ACGTAACTGATTGAA	1
+CTCAACCTGTCTCTC	2
+CGTAACTGATTGAAA	1
+TAGTGGAAAGCCTTC	1
+TAACTGATTGAAACG	1
+GGAAAGCCTTCCCAG	1
+AACTGATTGAAACGC	1
+AGCAGCAAAGGGGGG	1
+TGAAACGCTATTAGC	1
+GAAACGCTATTAGCG	1
+CGCTATTAGCGCGCA	1
+GCTATTAGCGCGCAC	1
+AAAGCGAGTGACGTA	1
+TATTAGCGCGCACCA	1
+TCAGGCGACCGGGCC	1
+ATTAGCGCGCACCAC	1
+GCGCGCACCACCGCT	1
+ACCGGAGTCCTATTC	1
+CGCGCACCACCGCTA	1
+CCACCGCTAACTAGC	1
+GAAAGCCTTCCCAGA	1
+CGCTAACTAGCTATC	1
+CTAACTAGCTATCCA	1
+TAACTAGCTATCCAT	1
+GACACACACAACAGT	2
+CTAGCTATCCATTTC	1
+GCCCTTGCAGAGCAA	1
+TAGCTATCCATTTCA	1
+TGACGAGCAGGGGTC	1
+CTATCCATTTCACAT	1
+TCCATTTCACATCCG	1
+GTTTGACGAGCAGGG	1
+CATTTCACATCCGTT	1
+AGTTAAGAGCATCGA	1
+CACATCCGTTACATA	1
+ATGTATGTATGTACA	1
+CTACACATTCCTCTG	2
+CATCCGTTACATATG	1
+CCGTTACATATGTAT	1
+CGAGTGACGTAACTG	1
+CGTTACATATGTATG	1
+CCATTTCACATCCGT	1
+GTTACATATGTATGT	1
+TTACATATGTATGTA	1
+CGAAACTACACATTC	2
+CATATGTATGTATGT	1
+ATATGTATGTATGTA	1