Mercurial > repos > iuc > stacks2_clonefilter
view test-data/procrad/process_radtags.out @ 0:1b6d07160736 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 10:57:08 -0400 |
| parents | |
| children | 42201b90e3f4 |
line wrap: on
line source
process_radtags v2.2, executed 2018-11-23 13:34:27 process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_2.dat --inline_null -e ecoRI -o stacks_outputs File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total R1.fastq 2222 0 0 4778 7000 Total Sequences 7000 Barcode Not Found 0 Low Quality 0 RAD Cutsite Not Found 4778 Retained Reads 2222 Barcode Filename Total NoRadTag LowQuality Retained ATGGGG PopA_01 160 94 0 66 GGGTAA PopA_02 146 86 0 60 AGGAAA PopA_03 224 132 0 92 TTTAAG PopA_04 168 146 0 22 GGTGTG PopA_05 220 154 0 66 TGATGT PopA_06 214 147 0 67 GGTTGT PopA_07 182 137 0 45 ATAAGT PopA_08 232 164 0 68 AAGATA PopA_09 182 134 0 48 TGTGAG PopA_10 168 128 0 40 ATAGTT PopA_11 200 132 0 68 GGAAGG PopA_12 178 136 0 42 TTTGTG PopA_13 190 152 0 38 TTAAAT PopA_14 166 96 0 70 AATAAG PopA_15 152 74 0 78 AAGAGG PopA_16 174 112 0 62 TAGTGT PopA_17 242 146 0 96 TGGAAG PopA_18 148 98 0 50 GGGTTG PopA_19 110 64 0 46 CATCAT PopA_20 178 144 0 34 GGAGAG PopB_20 210 142 0 68 GTTTTA PopB_01 136 90 0 46 TGATAA PopB_02 166 108 0 58 GTTGAT PopB_03 148 74 0 74 AGATTA PopB_04 180 156 0 24 GTATAG PopB_05 136 106 0 30 TTGGGA PopB_06 166 112 0 54 ATATAT PopB_07 242 156 0 86 GATGAG PopB_08 208 152 0 56 GGGAAT PopB_09 198 126 0 72 AGTAAT PopB_10 164 120 0 44 GGGATA PopB_11 146 90 0 56 GAGAAG PopB_12 162 110 0 52 AGTAGA PopB_13 204 146 0 58 AAGGAT PopB_14 180 128 0 52 AGGGTA PopB_15 134 72 0 62 TGTTTT PopB_16 138 98 0 40 ATGATG PopB_17 142 100 0 42 GAGTTA PopB_18 160 112 0 48 ATGTAG PopB_19 146 104 0 42 Sequences not recorded Barcode Total