Mercurial > repos > iuc > stacks2_cstacks

comparison test-data/procrad/process_radtags.out @ 5:0cd2df8af811 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:24:41 +0000
parents da351b9031de
children
comparison
equal deleted inserted replaced
4:0345dbaaa79b 5:0cd2df8af811
1 process_radtags v2.2, executed 2018-11-23 13:34:27 1 process_radtags v2.55, executed 2022-01-04 19:49:25 (zlib-1.2.11)
2 process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_2.dat --inline_null -e ecoRI -o stacks_outputs 2 process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp1omqb2_d/files/2/a/2/dataset_2a2dd860-d29c-4b1a-9d82-80c8f91d4013.dat --inline_null -o stacks_outputs -e ecoRI
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total 3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total
4 R1.fastq 2222 0 0 4778 7000 4 R1_01.fastq 1375 0 0 801 2176
5 R1_02.fastq 97 0 0 2078 2175
6 R1_03.fastq 749 0 0 1427 2176
7 R1_04.fastq 0 0 0 470 470
5 8
6 Total Sequences 7000 9 Total Sequences 6997
7 Barcode Not Found 0 10 Barcode Not Found 0
8 Low Quality 0 11 Low Quality 0
9 RAD Cutsite Not Found 4778 12 RAD Cutsite Not Found 4776
10 Retained Reads 2222 13 Retained Reads 2221
11 14
12 Barcode Filename Total NoRadTag LowQuality Retained 15 Barcode Filename Total NoRadTag LowQuality Retained
13 ATGGGG PopA_01 160 94 0 66 16 ATGGGG PopA_01 160 94 0 66
14 GGGTAA PopA_02 146 86 0 60 17 GGGTAA PopA_02 146 86 0 60
15 AGGAAA PopA_03 224 132 0 92 18 AGGAAA PopA_03 224 132 0 92
20 ATAAGT PopA_08 232 164 0 68 23 ATAAGT PopA_08 232 164 0 68
21 AAGATA PopA_09 182 134 0 48 24 AAGATA PopA_09 182 134 0 48
22 TGTGAG PopA_10 168 128 0 40 25 TGTGAG PopA_10 168 128 0 40
23 ATAGTT PopA_11 200 132 0 68 26 ATAGTT PopA_11 200 132 0 68
24 GGAAGG PopA_12 178 136 0 42 27 GGAAGG PopA_12 178 136 0 42
25 TTTGTG PopA_13 190 152 0 38 28 TTTGTG PopA_13 189 151 0 38
26 TTAAAT PopA_14 166 96 0 70 29 TTAAAT PopA_14 166 96 0 70
27 AATAAG PopA_15 152 74 0 78 30 AATAAG PopA_15 152 74 0 78
28 AAGAGG PopA_16 174 112 0 62 31 AAGAGG PopA_16 174 112 0 62
29 TAGTGT PopA_17 242 146 0 96 32 TAGTGT PopA_17 242 146 0 96
30 TGGAAG PopA_18 148 98 0 50 33 TGGAAG PopA_18 148 98 0 50
40 ATATAT PopB_07 242 156 0 86 43 ATATAT PopB_07 242 156 0 86
41 GATGAG PopB_08 208 152 0 56 44 GATGAG PopB_08 208 152 0 56
42 GGGAAT PopB_09 198 126 0 72 45 GGGAAT PopB_09 198 126 0 72
43 AGTAAT PopB_10 164 120 0 44 46 AGTAAT PopB_10 164 120 0 44
44 GGGATA PopB_11 146 90 0 56 47 GGGATA PopB_11 146 90 0 56
45 GAGAAG PopB_12 162 110 0 52 48 GAGAAG PopB_12 161 110 0 51
46 AGTAGA PopB_13 204 146 0 58 49 AGTAGA PopB_13 204 146 0 58
47 AAGGAT PopB_14 180 128 0 52 50 AAGGAT PopB_14 180 128 0 52
48 AGGGTA PopB_15 134 72 0 62 51 AGGGTA PopB_15 134 72 0 62
49 TGTTTT PopB_16 138 98 0 40 52 TGTTTT PopB_16 138 98 0 40
50 ATGATG PopB_17 142 100 0 42 53 ATGATG PopB_17 142 100 0 42
51 GAGTTA PopB_18 160 112 0 48 54 GAGTTA PopB_18 159 111 0 48
52 ATGTAG PopB_19 146 104 0 42 55 ATGTAG PopB_19 146 104 0 42
53 56
54 Sequences not recorded 57 Sequences not recorded
55 Barcode Total 58 Barcode Total