comparison macros.xml @ 6:8501601a118d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 2f4c9bfc48d63075ae18a1687e8d01ffea509084

5:0cd2df8af811

            <yield/>
        </requirements>
    </xml>

    <token name="@TOOL_VERSION@">2.55</token>
    <token name="@VERSION_SUFFIX@">2</token>
    <token name="@PROFILE@">20.05</token>

    <xml name="citation">
        <citations>
            <citation type="doi">10.1111/mec.12354</citation>

            <option value="--index_index">@TYPE@ is provded in FASTQ header (Illumina i5 and i7 reads) (--index_index)</option>
            <option value="--inline_index">@TYPE@ is inline with sequence on single-end read and occurs in FASTQ header (from either i5 or i7 read) (--inline_index)</option>
            <option value="--index_inline">@TYPE@ occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data) (--index_inline)</option>
        </expand>
    </xml>
</macros>

6:8501601a118d

            <yield/>
        </requirements>
    </xml>

    <token name="@TOOL_VERSION@">2.55</token>
    <token name="@VERSION_SUFFIX@">3</token>
    <token name="@PROFILE@">20.05</token>

    <xml name="citation">
        <citations>
            <citation type="doi">10.1111/mec.12354</citation>

            <option value="--index_index">@TYPE@ is provded in FASTQ header (Illumina i5 and i7 reads) (--index_index)</option>
            <option value="--inline_index">@TYPE@ is inline with sequence on single-end read and occurs in FASTQ header (from either i5 or i7 read) (--inline_index)</option>
            <option value="--index_inline">@TYPE@ occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data) (--index_inline)</option>
        </expand>
    </xml>
    <!-- for tests that check the output for "stacks completed" -->
    <xml name="test_element_stacks_completed" token_element_name="">
        <element name="@ELEMENT_NAME@"><assert_contents><has_text text="stacks completed on" /></assert_contents></element>
    </xml>
</macros>