Mercurial > repos > iuc > stacks2_cstacks
comparison test-data/procrad/process_radtags.out @ 0:da351b9031de draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author | iuc |
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date | Mon, 01 Jul 2019 11:03:59 -0400 |
parents | |
children | 0cd2df8af811 |
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-1:000000000000 | 0:da351b9031de |
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1 process_radtags v2.2, executed 2018-11-23 13:34:27 | |
2 process_radtags -p stacks_inputs/ -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_2.dat --inline_null -e ecoRI -o stacks_outputs | |
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total | |
4 R1.fastq 2222 0 0 4778 7000 | |
5 | |
6 Total Sequences 7000 | |
7 Barcode Not Found 0 | |
8 Low Quality 0 | |
9 RAD Cutsite Not Found 4778 | |
10 Retained Reads 2222 | |
11 | |
12 Barcode Filename Total NoRadTag LowQuality Retained | |
13 ATGGGG PopA_01 160 94 0 66 | |
14 GGGTAA PopA_02 146 86 0 60 | |
15 AGGAAA PopA_03 224 132 0 92 | |
16 TTTAAG PopA_04 168 146 0 22 | |
17 GGTGTG PopA_05 220 154 0 66 | |
18 TGATGT PopA_06 214 147 0 67 | |
19 GGTTGT PopA_07 182 137 0 45 | |
20 ATAAGT PopA_08 232 164 0 68 | |
21 AAGATA PopA_09 182 134 0 48 | |
22 TGTGAG PopA_10 168 128 0 40 | |
23 ATAGTT PopA_11 200 132 0 68 | |
24 GGAAGG PopA_12 178 136 0 42 | |
25 TTTGTG PopA_13 190 152 0 38 | |
26 TTAAAT PopA_14 166 96 0 70 | |
27 AATAAG PopA_15 152 74 0 78 | |
28 AAGAGG PopA_16 174 112 0 62 | |
29 TAGTGT PopA_17 242 146 0 96 | |
30 TGGAAG PopA_18 148 98 0 50 | |
31 GGGTTG PopA_19 110 64 0 46 | |
32 CATCAT PopA_20 178 144 0 34 | |
33 GGAGAG PopB_20 210 142 0 68 | |
34 GTTTTA PopB_01 136 90 0 46 | |
35 TGATAA PopB_02 166 108 0 58 | |
36 GTTGAT PopB_03 148 74 0 74 | |
37 AGATTA PopB_04 180 156 0 24 | |
38 GTATAG PopB_05 136 106 0 30 | |
39 TTGGGA PopB_06 166 112 0 54 | |
40 ATATAT PopB_07 242 156 0 86 | |
41 GATGAG PopB_08 208 152 0 56 | |
42 GGGAAT PopB_09 198 126 0 72 | |
43 AGTAAT PopB_10 164 120 0 44 | |
44 GGGATA PopB_11 146 90 0 56 | |
45 GAGAAG PopB_12 162 110 0 52 | |
46 AGTAGA PopB_13 204 146 0 58 | |
47 AAGGAT PopB_14 180 128 0 52 | |
48 AGGGTA PopB_15 134 72 0 62 | |
49 TGTTTT PopB_16 138 98 0 40 | |
50 ATGATG PopB_17 142 100 0 42 | |
51 GAGTTA PopB_18 160 112 0 48 | |
52 ATGTAG PopB_19 146 104 0 42 | |
53 | |
54 Sequences not recorded | |
55 Barcode Total |