Mercurial > repos > iuc > stacks2_cstacks
diff test-data/populations/populations.haps.vcf @ 0:da351b9031de draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 11:03:59 -0400 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/populations/populations.haps.vcf Mon Jul 01 11:03:59 2019 -0400 @@ -0,0 +1,18 @@ +##fileformat=VCFv4.2 +##fileDate=20190617 +##source="Stacks v2.4" +##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele"> +##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> +##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> +##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> +##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> +##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02 +1 1 . AC CA . PASS snp_columns=34,89 GT 0/1 0/1 +2 1 . CG TT . PASS snp_columns=145,157 GT 0/1 0/1 +3 1 . GG AA . PASS snp_columns=163,182 GT 0/0 0/1