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view test-data/procrad/process_radtags_paired.out @ 5:0cd2df8af811 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:24:41 +0000
parents da351b9031de
children
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process_radtags v2.55, executed 2022-01-04 19:50:15 (zlib-1.2.11)
process_radtags -p stacks_inputs/ --paired -i fastq -b /tmp/tmp1omqb2_d/files/2/4/2/dataset_24218646-a203-4cdb-b2b6-7e572d65add7.dat --inline_null -y gzfasta -o stacks_outputs --len_limit 50 -D -e ecoRI
File	Retained Reads	Low Quality	Barcode Not Found	RAD cutsite Not Found	Total
reads_R1_0.fastq	9222	0	0	4778	14000

Total Sequences	14000
Barcode Not Found	0
Low Quality	0
RAD Cutsite Not Found	4778
Retained Reads	9222

Barcode	Filename	Total	NoRadTag	LowQuality	Retained
ATGGGG	PopA_01	320	94	0	226
GGGTAA	PopA_02	292	86	0	206
AGGAAA	PopA_03	448	132	0	316
TTTAAG	PopA_04	336	146	0	190
GGTGTG	PopA_05	440	154	0	286
TGATGT	PopA_06	428	147	0	281
GGTTGT	PopA_07	364	137	0	227
ATAAGT	PopA_08	464	164	0	300
AAGATA	PopA_09	364	134	0	230
TGTGAG	PopA_10	336	128	0	208
ATAGTT	PopA_11	400	132	0	268
GGAAGG	PopA_12	356	136	0	220
TTTGTG	PopA_13	380	152	0	228
TTAAAT	PopA_14	332	96	0	236
AATAAG	PopA_15	304	74	0	230
AAGAGG	PopA_16	348	112	0	236
TAGTGT	PopA_17	484	146	0	338
TGGAAG	PopA_18	296	98	0	198
GGGTTG	PopA_19	220	64	0	156
CATCAT	PopA_20	356	144	0	212
GGAGAG	PopB_20	420	142	0	278
GTTTTA	PopB_01	272	90	0	182
TGATAA	PopB_02	332	108	0	224
GTTGAT	PopB_03	296	74	0	222
AGATTA	PopB_04	360	156	0	204
GTATAG	PopB_05	272	106	0	166
TTGGGA	PopB_06	332	112	0	220
ATATAT	PopB_07	484	156	0	328
GATGAG	PopB_08	416	152	0	264
GGGAAT	PopB_09	396	126	0	270
AGTAAT	PopB_10	328	120	0	208
GGGATA	PopB_11	292	90	0	202
GAGAAG	PopB_12	324	110	0	214
AGTAGA	PopB_13	408	146	0	262
AAGGAT	PopB_14	360	128	0	232
AGGGTA	PopB_15	268	72	0	196
TGTTTT	PopB_16	276	98	0	178
ATGATG	PopB_17	284	100	0	184
GAGTTA	PopB_18	320	112	0	208
ATGTAG	PopB_19	292	104	0	188

Sequences not recorded
Barcode	Total