Mercurial > repos > iuc > stacks2_cstacks
view test-data/shortreads/process_shortreads.out @ 0:da351b9031de draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 11:03:59 -0400 |
| parents | |
| children | fcce77c09289 |
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process_shortreads v2.2, executed 2018-12-03 21:27:19 process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmpiZT6X4/files/000/dataset_2.dat --inline_null -o stacks_outputs File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total R1.fastq 7000 0 0 0 0 7000 Total Sequences 7000 Ambiguous Barcodes 0 Low Quality 0 Trimmed Reads 0 Orphaned Paired-ends 0 Retained Reads 7000 Barcode Filename Total Retained ATGGGG PopA_01 160 160 GGGTAA PopA_02 146 146 AGGAAA PopA_03 224 224 TTTAAG PopA_04 168 168 GGTGTG PopA_05 220 220 TGATGT PopA_06 214 214 GGTTGT PopA_07 182 182 ATAAGT PopA_08 232 232 AAGATA PopA_09 182 182 TGTGAG PopA_10 168 168 ATAGTT PopA_11 200 200 GGAAGG PopA_12 178 178 TTTGTG PopA_13 190 190 TTAAAT PopA_14 166 166 AATAAG PopA_15 152 152 AAGAGG PopA_16 174 174 TAGTGT PopA_17 242 242 TGGAAG PopA_18 148 148 GGGTTG PopA_19 110 110 CATCAT PopA_20 178 178 GGAGAG PopB_20 210 210 GTTTTA PopB_01 136 136 TGATAA PopB_02 166 166 GTTGAT PopB_03 148 148 AGATTA PopB_04 180 180 GTATAG PopB_05 136 136 TTGGGA PopB_06 166 166 ATATAT PopB_07 242 242 GATGAG PopB_08 208 208 GGGAAT PopB_09 198 198 AGTAAT PopB_10 164 164 GGGATA PopB_11 146 146 GAGAAG PopB_12 162 162 AGTAGA PopB_13 204 204 AAGGAT PopB_14 180 180 AGGGTA PopB_15 134 134 TGTTTT PopB_16 138 138 ATGATG PopB_17 142 142 GAGTTA PopB_18 160 160 ATGTAG PopB_19 146 146 Sequences not recorded Barcode Total