Mercurial > repos > iuc > stacks2_cstacks
view test-data/tsv2bam/tsv2bam.log @ 2:fcce77c09289 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"
| author | iuc |
|---|---|
| date | Thu, 16 Jul 2020 07:23:04 -0400 |
| parents | da351b9031de |
| children | 0345dbaaa79b |
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tsv2bam v2.52, executed 2020-03-16 15:39:40 (zlib-1.2.11) tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/ Configuration for this run: Stacks directory: 'stacks_outputs/' Population map: 'denovo_map/popmap_cstacks.tsv' Num. samples: 2 Paired-end reads directory: 'demultiplexed/' Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'. Loading the catalog... Processing sample 'PopA_01'... Processing sample 'PopA_02'... Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records. Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records. tsv2bam is done.