comparison test-data/gstacks/gstacks.log.distribs @ 2:421c33b8bf17 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"

1:afdbc7fcce70

BEGIN clockings
Num. threads: 1
Parallel time: 0.0
Average thread time spent:
     0.0  reading (3.1%)
     0.0  processing (95.2%)
             0.0 pre-alignments block (72.2%)
             0.0  reformatting fw-reads (0.1%)
             0.0  assembling (22.2%)
             0.0  initializing alignments (5.4%)
             0.0  aligning (42.9%)
             0.0  merging read pairs (1.5%)
             0.0 post-alignments block (21.2%)
             0.0  filtering reads (0.0%)
             0.0  counting nucleotides (3.5%)
             0.0  genotyping (1.9%)
             0.0  haplotyping (1.0%)
             0.0  computing consensus (0.1%)
             0.0  building_fa (0.1%)
             0.0  building_vcf (14.6%)
     0.0  writing_fa (0.1%)
     0.0  writing_vcf (1.3%)
     0.0  clocking (0.2%)
Total time spent writing vcf: 0.0 (1.3%)
VCFwrite block size: mean=1.0(n=3); max=1
END clockings

2:421c33b8bf17

BEGIN clockings
Num. threads: 1
Parallel time: 0.0
Average thread time spent:
     0.0  reading (3.0%)
     0.0  processing (95.7%)
             0.0 pre-alignments block (74.4%)
             0.0  reformatting fw-reads (0.2%)
             0.0  assembling (27.3%)
             0.0  initializing alignments (8.7%)
             0.0  aligning (36.6%)
             0.0  merging read pairs (1.6%)
             0.0 post-alignments block (19.8%)
             0.0  filtering reads (0.0%)
             0.0  counting nucleotides (3.2%)
             0.0  genotyping (1.5%)
             0.0  haplotyping (0.9%)
             0.0  computing consensus (0.1%)
             0.0  building_fa (0.1%)
             0.0  building_vcf (14.0%)
     0.0  writing_fa (0.0%)
     0.0  writing_vcf (0.9%)
     0.0  clocking (0.1%)
Total time spent writing vcf: 0.0 (0.8%)
VCFwrite block size: mean=1.0(n=3); max=1
END clockings