comparison test-data/populations/populations.snps.vcf @ 0:b9822370f843 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author iuc
date Mon, 01 Jul 2019 11:04:37 -0400
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comparison
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-1:000000000000 0:b9822370f843
1 ##fileformat=VCFv4.2
2 ##fileDate=20190617
3 ##source="Stacks v2.4"
4 ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele">
5 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
8 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth">
9 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
10 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
11 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
13 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
14 ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on">
15 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02
16 1 34 . A C . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:18:9,9:40:-20.07,0.00,-20.07 0/1:12:6,6:40:-13.54,-0.00,-13.54
17 1 89 . A C . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:18:9,9:40:-20.07,0.00,-20.07 0/1:12:6,6:40:-13.54,-0.00,-13.54
18 2 145 . C T . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:17:9,8:40:-17.57,0.00,-20.29 0/1:13:5,8:40:-18.77,-0.00,-10.39
19 2 157 . G T . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:17:9,8:40:-17.57,0.00,-20.29 0/1:13:5,8:40:-18.77,-0.00,-10.39
20 3 163 . G A . PASS NS=2;AF=0.250 GT:DP:AD:GQ:GL 0/0:23:23,0:40:-0.00,-6.89,-68.45 0/1:23:11,12:40:-28.67,0.00,-25.99
21 3 182 . G A . PASS NS=2;AF=0.250 GT:DP:AD:GQ:GL 0/0:23:23,0:40:-0.00,-6.89,-68.45 0/1:23:11,12:40:-28.67,0.00,-25.99