Mercurial > repos > iuc > stacks2_denovomap

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 75f83e7b16127aecc68a58df2cb75062f2a9296a"
author iuc
date Wed, 01 Sep 2021 11:24:18 +0000
parents 421c33b8bf17
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tsv2bam v2.55, executed 2021-08-24 13:29:01 (zlib-1.2.11)
tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/
Configuration for this run:
  Stacks directory: 'stacks_outputs/'
  Population map: 'denovo_map/popmap_cstacks.tsv'
  Num. samples: 2
  Paired-end reads directory: 'demultiplexed/'

Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'.
Loading the catalog...
Processing sample 'PopA_01'...
Processing sample 'PopA_02'...

Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records.
Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records.

tsv2bam is done.