view test-data/cstacks/cstacks.log @ 5:f6e91108b7b1 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:32:27 +0000
parents d35cb34f2b85
children
line wrap: on
line source

cstacks parameters selected:
  Loci matched based on sequence identity.
  Number of mismatches allowed between stacks: 1
  Gapped alignments: enabled
Constructing catalog from 2 samples.

Initializing new catalog...
  Parsing stacks_inputs/PopA_01.tags.tsv
  Parsing stacks_inputs/PopA_01.snps.tsv
  Parsing stacks_inputs/PopA_01.alleles.tsv
  3 loci were newly added to the catalog.

Processing sample stacks_inputs/PopA_02 [2 of 2]
  Parsing stacks_inputs/PopA_02.tags.tsv
  Parsing stacks_inputs/PopA_02.snps.tsv
  Parsing stacks_inputs/PopA_02.alleles.tsv
Searching for sequence matches...
  3 loci in the catalog, 184 kmers in the catalog hash.
Searching for gapped alignments...
Merging matches into catalog...
  3 loci were matched to a catalog locus.
  0 loci were matched to a catalog locus using gapped alignments.
  0 loci were newly added to the catalog.
  0 loci matched more than one catalog locus, linking them.
    0 linked catalog loci were merged into 0 loci.

Writing catalog in directory 'stacks_inputs/'.
Final catalog contains 3 loci.
cstacks is done.