diff macros.xml @ 1:38c9f9a680f0 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"

--- a/macros.xml	Mon Jul 01 10:58:28 2019 -0400
+++ b/macros.xml	Mon Sep 30 14:18:47 2019 -0400
@@ -8,7 +8,7 @@
     </xml>
 
     <token name="@STACKS_VERSION@">2.4</token>
-    <token name="@WRAPPER_VERSION@">0</token>
+    <token name="@WRAPPER_VERSION@">1</token>
     <!-- fix to 18.01 since https://github.com/galaxyproject/galaxy/pull/7032 -->
     <token name="@PROFILE@">18.01</token>
 
@@ -216,8 +216,8 @@
         </expand>
     </xml>
 
-    <!-- fastq input (used in denovomap, tsv2bam, ustacks) 
-         - fastq_optional: makes fastq input optional (true/false) 
+    <!-- fastq input (used in denovomap, tsv2bam, ustacks)
+         - fastq_optional: makes fastq input optional (true/false)
          - se_option: wording for "single end" option (for tsv2bam this is the
               reverse reads for the others its the forward reads)
          - help: help text -->
@@ -568,10 +568,10 @@
         </expand>
     </xml>
 
-	<!-- variant calling option for use in gstacks and denovomap 
+	<!-- variant calling option for use in gstacks and denovomap
          default for var_alpha is 0.01 if model == marukilow (which is the case in denovomap and refmap)
          otherwise no default is is available and gstacks will output and error
-         "Error: No value was provided for \-\-var-alpha and there is no default for this model)" 
+         "Error: No value was provided for \-\-var-alpha and there is no default for this model)"
 	-->
     <xml name="variant_calling_options_vg" token_varalpha_default="">
         <param argument="--var-alpha" name="var_alpha" type="float" value="@VARALPHA_DEFAULT@" min="0" label="Alpha threshold for discovering SNPs" help="Default is 0.01 if the marukilow model is used (which is the case in refmap and denovomap), otherwise no default value is available." />