Mercurial > repos > iuc > stacks2_kmerfilter
view test-data/refmap/populations.log.distribs @ 3:1544278c272e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9a6c14bcb90c0b30c583294a993fac47504f4009"
author | iuc |
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date | Tue, 27 Apr 2021 09:32:17 +0000 |
parents | b2e3553e1be2 |
children |
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# Note: Individual distributions can be extracted using the `stacks-dist-extract` utility. # e.g. `stacks-dist-extract populations.log.distribs dist_name` BEGIN batch_progress Contig_95: analyzed 1 loci; filtered 0 loci; 1 loci seen. 94 genomic sites, of which 0 were covered by multiple loci (0.0%). Contig_1381: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_2103: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_2644: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_3015: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_3253: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). Contig_3569: analyzed 2 loci; filtered 0 loci; 2 loci seen. 94 genomic sites, of which 94 were covered by multiple loci (100.0%). END batch_progress BEGIN samples_per_loc_prefilters # Distribution of valid samples matched to a catalog locus prior to filtering. n_samples n_loci 2 13 END samples_per_loc_prefilters BEGIN missing_samples_per_loc_prefilters # Distribution of missing samples for each catalog locus prior to filtering. # Absent samples at locus Count 0 13 END missing_samples_per_loc_prefilters BEGIN snps_per_loc_prefilters # Distribution of the number of SNPs per catalog locus prior to filtering. n_snps n_loci 0 10 2 3 END snps_per_loc_prefilters BEGIN samples_per_loc_postfilters # Distribution of valid samples matched to a catalog locus after filtering. n_samples n_loci 2 13 END samples_per_loc_postfilters BEGIN missing_samples_per_loc_postfilters # Distribution of missing samples for each catalog locus after filtering. # Absent samples at locus Count 0 13 END missing_samples_per_loc_postfilters BEGIN snps_per_loc_postfilters # Distribution of the number of SNPs per catalog locus (after filtering). n_snps n_loci 0 10 2 3 END snps_per_loc_postfilters