# HG changeset patch
# User iuc
# Date 1581549723 18000
# Node ID 38942a7e38014a5a2df00f6ca6a3cd6db9e0ecac
# Parent  9a44832748c5b26e7eb25ca549542c0f8229305a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4233f68e34f397685885d1828a85d5849a7b17bf"

diff -r 9a44832748c5 -r 38942a7e3801 stacks_populations.xml
--- a/stacks_populations.xml	Mon Sep 30 14:17:47 2019 -0400
+++ b/stacks_populations.xml	Wed Feb 12 18:22:03 2020 -0500
@@ -42,7 +42,7 @@
     -M '$popmap'
 #end if
 #if str($batch_size) != '':
-    -batch_size '$batch_size'
+    --batch-size '$batch_size'
 #end if
 
 ## Data filtering
@@ -309,6 +309,7 @@
                </collection>
             </param>
             <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" />
+            <param name="batch_size" value="9999" />
             <param name="add_log" value="yes" />
             <output ftype="txt" name="output_log" value="populations/populations.log" lines_diff="4"/>
             <output ftype="tabular" name="out_haplotypes" value="populations/populations.haplotypes.tsv"/>