Mercurial > repos > iuc > stacks2_procrad

annotate test-data/procrad/process_radtags2.out @ 7:8cff84759bf6 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4
author iuc
date Mon, 23 May 2022 17:57:30 +0000
parents b4bab607eb05
children
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b4bab607eb05 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents: 1
diff changeset
1 process_radtags v2.55, executed 2022-01-04 19:49:47 (zlib-1.2.11)
b4bab607eb05 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
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diff changeset
2 process_radtags -p stacks_inputs/ -i gzfastq -b /tmp/tmp1omqb2_d/files/6/1/9/dataset_6199c14a-22f0-45b7-aea7-7725c6dbf716.dat --inline_null -y gzfastq -o stacks_outputs -w 0.1 -s 11 -c -q -D -e ecoRI
1
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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4 R1.fastq.gz 2222 0 0 4778 7000
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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5 R2.fastq.gz 0 0 7000 0 7000
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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7 Total Sequences 14000
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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8 Barcode Not Found 7000
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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9 Low Quality 0
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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10 RAD Cutsite Not Found 4778
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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11 Retained Reads 2222
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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13 Barcode Filename Total NoRadTag LowQuality Retained
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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14 ATGGGG PopA_01 160 94 0 66
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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15 GGGTAA PopA_02 146 86 0 60
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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20 GGTTGT PopA_07 182 137 0 45
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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22 AAGATA PopA_09 182 134 0 48
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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23 TGTGAG PopA_10 168 128 0 40
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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24 ATAGTT PopA_11 200 132 0 68
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25 GGAAGG PopA_12 178 136 0 42
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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26 TTTGTG PopA_13 190 152 0 38
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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27 TTAAAT PopA_14 166 96 0 70
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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28 AATAAG PopA_15 152 74 0 78
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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29 AAGAGG PopA_16 174 112 0 62
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ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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32 GGGTTG PopA_19 110 64 0 46
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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34 GGAGAG PopB_20 210 142 0 68
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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35 GTTTTA PopB_01 136 90 0 46
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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39 GTATAG PopB_05 136 106 0 30
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44 AGTAAT PopB_10 164 120 0 44
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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45 GGGATA PopB_11 146 90 0 56
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46 GAGAAG PopB_12 162 110 0 52
ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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47 AGTAGA PopB_13 204 146 0 58
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53 ATGTAG PopB_19 146 104 0 42
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ca7aa77c7f57 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
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56 Barcode Total
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