Mercurial > repos > iuc > stacks2_refmap
comparison test-data/procrad/process_radtags_paired.out @ 0:45385ba40a75 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author | iuc |
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date | Mon, 01 Jul 2019 11:03:22 -0400 |
parents | |
children | 887e0991eb24 |
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-1:000000000000 | 0:45385ba40a75 |
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1 process_radtags v2.2, executed 2018-11-23 13:35:34 | |
2 process_radtags -p stacks_inputs/ --paired -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_91.dat --len_limit 50 -D -y gzfasta --inline_null -e ecoRI -o stacks_outputs | |
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total | |
4 reads_R1_0.fastq 9222 0 0 4778 14000 | |
5 | |
6 Total Sequences 14000 | |
7 Barcode Not Found 0 | |
8 Low Quality 0 | |
9 RAD Cutsite Not Found 4778 | |
10 Retained Reads 9222 | |
11 | |
12 Barcode Filename Total NoRadTag LowQuality Retained | |
13 ATGGGG PopA_01 320 94 0 226 | |
14 GGGTAA PopA_02 292 86 0 206 | |
15 AGGAAA PopA_03 448 132 0 316 | |
16 TTTAAG PopA_04 336 146 0 190 | |
17 GGTGTG PopA_05 440 154 0 286 | |
18 TGATGT PopA_06 428 147 0 281 | |
19 GGTTGT PopA_07 364 137 0 227 | |
20 ATAAGT PopA_08 464 164 0 300 | |
21 AAGATA PopA_09 364 134 0 230 | |
22 TGTGAG PopA_10 336 128 0 208 | |
23 ATAGTT PopA_11 400 132 0 268 | |
24 GGAAGG PopA_12 356 136 0 220 | |
25 TTTGTG PopA_13 380 152 0 228 | |
26 TTAAAT PopA_14 332 96 0 236 | |
27 AATAAG PopA_15 304 74 0 230 | |
28 AAGAGG PopA_16 348 112 0 236 | |
29 TAGTGT PopA_17 484 146 0 338 | |
30 TGGAAG PopA_18 296 98 0 198 | |
31 GGGTTG PopA_19 220 64 0 156 | |
32 CATCAT PopA_20 356 144 0 212 | |
33 GGAGAG PopB_20 420 142 0 278 | |
34 GTTTTA PopB_01 272 90 0 182 | |
35 TGATAA PopB_02 332 108 0 224 | |
36 GTTGAT PopB_03 296 74 0 222 | |
37 AGATTA PopB_04 360 156 0 204 | |
38 GTATAG PopB_05 272 106 0 166 | |
39 TTGGGA PopB_06 332 112 0 220 | |
40 ATATAT PopB_07 484 156 0 328 | |
41 GATGAG PopB_08 416 152 0 264 | |
42 GGGAAT PopB_09 396 126 0 270 | |
43 AGTAAT PopB_10 328 120 0 208 | |
44 GGGATA PopB_11 292 90 0 202 | |
45 GAGAAG PopB_12 324 110 0 214 | |
46 AGTAGA PopB_13 408 146 0 262 | |
47 AAGGAT PopB_14 360 128 0 232 | |
48 AGGGTA PopB_15 268 72 0 196 | |
49 TGTTTT PopB_16 276 98 0 178 | |
50 ATGATG PopB_17 284 100 0 184 | |
51 GAGTTA PopB_18 320 112 0 208 | |
52 ATGTAG PopB_19 292 104 0 188 | |
53 | |
54 Sequences not recorded | |
55 Barcode Total |