annotate test-data/refmap/populations.log.distribs @ 0:ad7a60726fc3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460

# Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
#       e.g. `stacks-dist-extract populations.log.distribs dist_name`

BEGIN batch_progress
Contig_95: analyzed 1 loci; filtered 0 loci; 1 loci seen.
    94 genomic sites, of which 0 were covered by multiple loci (0.0%).
Contig_1381: analyzed 2 loci; filtered 0 loci; 2 loci seen.
    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
Contig_2103: analyzed 2 loci; filtered 0 loci; 2 loci seen.
    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
Contig_2644: analyzed 2 loci; filtered 0 loci; 2 loci seen.
    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
Contig_3015: analyzed 2 loci; filtered 0 loci; 2 loci seen.
    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
Contig_3253: analyzed 2 loci; filtered 0 loci; 2 loci seen.
    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
Contig_3569: analyzed 2 loci; filtered 0 loci; 2 loci seen.
    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
END batch_progress

BEGIN samples_per_loc_prefilters
# Distribution of valid samples matched to a catalog locus prior to filtering.
n_samples	n_loci
2	13
END samples_per_loc_prefilters

BEGIN missing_samples_per_loc_prefilters
# Distribution of missing samples for each catalog locus prior to filtering.
# Absent samples at locus	Count
0	13
END missing_samples_per_loc_prefilters

BEGIN snps_per_loc_prefilters
# Distribution of the number of SNPs per catalog locus prior to filtering.
n_snps	n_loci
0	10
2	3
END snps_per_loc_prefilters

BEGIN samples_per_loc_postfilters
# Distribution of valid samples matched to a catalog locus after filtering.
n_samples	n_loci
2	13
END samples_per_loc_postfilters

BEGIN missing_samples_per_loc_postfilters
# Distribution of missing samples for each catalog locus after filtering.
# Absent samples at locus	Count
0	13
END missing_samples_per_loc_postfilters

BEGIN snps_per_loc_postfilters
# Distribution of the number of SNPs per catalog locus (after filtering).
n_snps	n_loci
0	10
2	3
END snps_per_loc_postfilters