comparison test-data/gstacks/gstacks.log.distribs @ 4:17d39bf0a63a draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 75f83e7b16127aecc68a58df2cb75062f2a9296a"

3:c5d7050e4ad7

BEGIN clockings
Num. threads: 1
Parallel time: 0.0
Average thread time spent:
     0.0  reading (3.0%)
     0.0  processing (95.7%)
             0.0 pre-alignments block (74.4%)
             0.0  reformatting fw-reads (0.2%)
             0.0  assembling (27.3%)
             0.0  initializing alignments (8.7%)
             0.0  aligning (36.6%)
             0.0  merging read pairs (1.6%)
             0.0 post-alignments block (19.8%)
             0.0  filtering reads (0.0%)
             0.0  counting nucleotides (3.2%)
             0.0  genotyping (1.5%)
             0.0  haplotyping (0.9%)
             0.0  computing consensus (0.1%)
             0.0  building_fa (0.1%)
             0.0  building_vcf (14.0%)
     0.0  writing_fa (0.0%)
     0.0  writing_vcf (0.9%)
     0.0  clocking (0.1%)
Total time spent writing vcf: 0.0 (0.8%)
VCFwrite block size: mean=1.0(n=3); max=1
END clockings

4:17d39bf0a63a

BEGIN clockings
Num. threads: 1
Parallel time: 0.0
Average thread time spent:
     0.0  reading (2.8%)
     0.0  processing (95.9%)
             0.0 pre-alignments block (76.1%)
             0.0  reformatting fw-reads (0.1%)
             0.0  assembling (17.5%)
             0.0  initializing alignments (4.0%)
             0.0  aligning (52.9%)
             0.0  merging read pairs (1.6%)
             0.0 post-alignments block (18.7%)
             0.0  filtering reads (0.0%)
             0.0  counting nucleotides (2.8%)
             0.0  genotyping (1.2%)
             0.0  haplotyping (1.0%)
             0.0  computing consensus (0.1%)
             0.0  building_fa (0.1%)
             0.0  building_vcf (13.4%)
     0.0  writing_fa (0.0%)
     0.0  writing_vcf (0.9%)
     0.0  clocking (0.2%)
Total time spent writing vcf: 0.0 (0.9%)
VCFwrite block size: mean=1.0(n=3); max=1
END clockings