Mercurial > repos > iuc > stacks2_shortreads
comparison test-data/procrad/process_radtags2.out @ 1:1974fee35ca7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author | iuc |
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date | Mon, 30 Sep 2019 14:16:13 -0400 |
parents | |
children | 4e280b27a831 |
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0:ad7a60726fc3 | 1:1974fee35ca7 |
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1 process_radtags v2.4, executed 2019-09-30 14:57:00 (zlib-1.2.11) | |
2 process_radtags -p stacks_inputs/ -i gzfastq -b /tmp/tmpe_shit/files/d/e/d/dataset_ded45538-15ef-471f-9585-07ee09b6e6d4.dat --inline_null -y gzfastq -o stacks_outputs -w 0.1 -s 11 -c -q -D -e ecoRI | |
3 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total | |
4 R1.fastq.gz 2222 0 0 4778 7000 | |
5 R2.fastq.gz 0 0 7000 0 7000 | |
6 | |
7 Total Sequences 14000 | |
8 Barcode Not Found 7000 | |
9 Low Quality 0 | |
10 RAD Cutsite Not Found 4778 | |
11 Retained Reads 2222 | |
12 | |
13 Barcode Filename Total NoRadTag LowQuality Retained | |
14 ATGGGG PopA_01 160 94 0 66 | |
15 GGGTAA PopA_02 146 86 0 60 | |
16 AGGAAA PopA_03 224 132 0 92 | |
17 TTTAAG PopA_04 168 146 0 22 | |
18 GGTGTG PopA_05 220 154 0 66 | |
19 TGATGT PopA_06 214 147 0 67 | |
20 GGTTGT PopA_07 182 137 0 45 | |
21 ATAAGT PopA_08 232 164 0 68 | |
22 AAGATA PopA_09 182 134 0 48 | |
23 TGTGAG PopA_10 168 128 0 40 | |
24 ATAGTT PopA_11 200 132 0 68 | |
25 GGAAGG PopA_12 178 136 0 42 | |
26 TTTGTG PopA_13 190 152 0 38 | |
27 TTAAAT PopA_14 166 96 0 70 | |
28 AATAAG PopA_15 152 74 0 78 | |
29 AAGAGG PopA_16 174 112 0 62 | |
30 TAGTGT PopA_17 242 146 0 96 | |
31 TGGAAG PopA_18 148 98 0 50 | |
32 GGGTTG PopA_19 110 64 0 46 | |
33 CATCAT PopA_20 178 144 0 34 | |
34 GGAGAG PopB_20 210 142 0 68 | |
35 GTTTTA PopB_01 136 90 0 46 | |
36 TGATAA PopB_02 166 108 0 58 | |
37 GTTGAT PopB_03 148 74 0 74 | |
38 AGATTA PopB_04 180 156 0 24 | |
39 GTATAG PopB_05 136 106 0 30 | |
40 TTGGGA PopB_06 166 112 0 54 | |
41 ATATAT PopB_07 242 156 0 86 | |
42 GATGAG PopB_08 208 152 0 56 | |
43 GGGAAT PopB_09 198 126 0 72 | |
44 AGTAAT PopB_10 164 120 0 44 | |
45 GGGATA PopB_11 146 90 0 56 | |
46 GAGAAG PopB_12 162 110 0 52 | |
47 AGTAGA PopB_13 204 146 0 58 | |
48 AAGGAT PopB_14 180 128 0 52 | |
49 AGGGTA PopB_15 134 72 0 62 | |
50 TGTTTT PopB_16 138 98 0 40 | |
51 ATGATG PopB_17 142 100 0 42 | |
52 GAGTTA PopB_18 160 112 0 48 | |
53 ATGTAG PopB_19 146 104 0 42 | |
54 | |
55 Sequences not recorded | |
56 Barcode Total | |
57 CCGGTG 772 | |
58 CCGCGC 750 | |
59 CCGACA 743 | |
60 CCGGTC 723 | |
61 CCGCCT 695 | |
62 CCGTGG 675 | |
63 CCGGTT 667 | |
64 CCGATC 579 | |
65 CCGTGT 417 | |
66 CCGTAT 252 | |
67 CCGCGT 198 | |
68 CCGCGG 150 | |
69 CCGCAT 117 | |
70 CCGTTC 94 | |
71 CCGTAC 38 | |
72 CCGGGA 32 | |
73 CCGGAG 26 | |
74 CCGAAC 24 | |
75 CCGAGT 18 | |
76 CCGTGA 10 | |
77 CCGGGT 7 | |
78 CCGCTT 2 | |
79 CCGACG 2 | |
80 CCGATT 1 | |
81 CCGCCC 1 | |
82 CCGGCA 1 | |
83 CCGGCT 1 | |
84 CCGGGG 1 | |
85 CCGCCG 1 | |
86 CCGTGC 1 | |
87 CCGTAG 1 | |
88 CCGACT 1 |