Mercurial > repos > iuc > stacks2_shortreads
comparison test-data/populations/populations.haps.vcf @ 0:ad7a60726fc3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 11:02:39 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:ad7a60726fc3 |
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| 1 ##fileformat=VCFv4.2 | |
| 2 ##fileDate=20190617 | |
| 3 ##source="Stacks v2.4" | |
| 4 ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele"> | |
| 5 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> | |
| 6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> | |
| 7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> | |
| 8 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth"> | |
| 9 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 10 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> | |
| 11 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> | |
| 12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 13 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 14 ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on"> | |
| 15 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02 | |
| 16 1 1 . AC CA . PASS snp_columns=34,89 GT 0/1 0/1 | |
| 17 2 1 . CG TT . PASS snp_columns=145,157 GT 0/1 0/1 | |
| 18 3 1 . GG AA . PASS snp_columns=163,182 GT 0/0 0/1 |