comparison test-data/stacks_outputs/tsv2bam.log @ 0:ad7a60726fc3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author iuc
date Mon, 01 Jul 2019 11:02:39 -0400
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-1:000000000000 0:ad7a60726fc3
1 tsv2bam v2.4, executed 2019-06-18 10:34:45 (zlib-1.2.11)
2 tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/
3 Configuration for this run:
4 Stacks directory: 'stacks_outputs/'
5 Population map: 'denovo_map/popmap_cstacks.tsv'
6 Num. samples: 2
7 Paired-end reads directory: 'demultiplexed/'
8
9 Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'.
10 Loading the catalog...
11 Processing sample 'PopA_01'...
12 Processing sample 'PopA_02'...
13
14 Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records.
15 Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records.
16
17 tsv2bam is done.