Mercurial > repos > iuc > stacks2_shortreads
comparison test-data/tsv2bam/tsv2bam.log @ 0:ad7a60726fc3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 11:02:39 -0400 |
| parents | |
| children | 43e3eeb2e0ec |
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| -1:000000000000 | 0:ad7a60726fc3 |
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| 1 tsv2bam v2.4, executed 2019-06-17 21:22:16 (zlib-1.2.11) | |
| 2 tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/ | |
| 3 Configuration for this run: | |
| 4 Stacks directory: 'stacks_outputs/' | |
| 5 Population map: 'denovo_map/popmap_cstacks.tsv' | |
| 6 Num. samples: 2 | |
| 7 Paired-end reads directory: 'demultiplexed/' | |
| 8 | |
| 9 Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'. | |
| 10 Loading the catalog... | |
| 11 Processing sample 'PopA_01'... | |
| 12 Processing sample 'PopA_02'... | |
| 13 | |
| 14 Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records. | |
| 15 Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records. | |
| 16 | |
| 17 tsv2bam is done. |